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1. Analysis-of-Protein-Expression Analysis-of-Protein-Expression Public

   This project evaluates False Discovery Rate strategies in shotgun proteomics by comparing concatenated and un-concatenated database search approaches to determine their impact on peptide identifica…

2. alzheimers-gene-analysis alzheimers-gene-analysis Public

   This project investigates genes linked to late-onset Alzheimer's, focusing on *TOMM40*, *APOE*, *PVRL2*, and *APOC1*. Using GWAS, transcriptome, and MRI data, it analyzes gene expression patterns a…

   MATLAB

3. DNA-python-project DNA-python-project Public

   This Python script reconstructs a full DNA sequence from overlapping fragments. It cleans the raw data, builds a De Bruijn graph with `networkx` to represent overlaps, and finds an Eulerian path to…

   Python

4. global-microbiome-differential-analysis global-microbiome-differential-analysis Public

   Comparative analysis of gut microbiome composition across five countries using MicroBioMap, combining exploratory analysis, non-parametric tests, and ANCOM-BC2 to detect geographically structured t…

5. calculate-duplex-metrics calculate-duplex-metrics Public

   Forked from WEHIGenomicsRnD/calculate-duplex-metrics

   R CLI tool to calculate duplex sequencing QC metrics

   R

6. cancer-gene-expression-analysis cancer-gene-expression-analysis Public

   This project explores high-dimensional gene expression data from prostate cancer and leukemia studies to identify differentially expressed genes, build predictive models for cancer type classificat…