Update release system.

Build and upload the release binaries for all supported platforms.
Also, build and upload Python wheels to PyPI.

Author: ThePituLegend

.github/workflows/publish_release_binaries.yaml

@@ -6,8 +6,27 @@ on:
   workflow_dispatch:
 
 jobs:
-  Publish-Release-Binaries:
-    runs-on: ubuntu-latest
+  Build-Release-Binaries:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-24.04
+            label: linux.x86_64
+            simd: true
+            ext: ""
+          - os: macos-13
+            label: darwin.x86_64
+            simd: true
+            ext: ""
+          - os: macos-14
+            label: darwin.aarch64
+            simd: false
+            ext: ""
+          - os: windows-2022
+            label: windows.x86_64
+            simd: true
+            ext: ".exe"
 
     steps:
     - name: Checkout the repository
@@ -16,50 +35,82 @@ jobs:
         fetch-depth: 1
         submodules: recursive
 
-    - name: Set reusable strings
+    - name: Set reusable paths
       id: strings
       shell: bash
       run: |
         echo "build-dir=${{ github.workspace }}/build" >> "$GITHUB_OUTPUT"
         echo "bin-dir=${{ github.workspace }}/bin" >> "$GITHUB_OUTPUT"
+        echo "release-dir=${{ github.workspace }}/bin/release" >> "$GITHUB_OUTPUT"
+
+    - name: Create release directory
+      run: mkdir -p ${{ steps.strings.outputs.release-dir }}
 
-    - name: Configure CMake (w/ vector support)
+    - name: Configure CMake (SIMD)
+      if: matrix.simd == true
       run: >
         cmake -B ${{ steps.strings.outputs.build-dir }}
         -DQUICKED_NONATIVE=ON
+        ${{ matrix.os == 'macos-14' && '-DCMAKE_APPLE_SILICON_PROCESSOR=arm64' || '' }}
         -S ${{ github.workspace }}
 
-    - name: Build (w/ vector support)
+    - name: Build (SIMD)
+      if: matrix.simd == true
       run: cmake --build ${{ steps.strings.outputs.build-dir }} --config Release --parallel 4
 
-    - name: Move the target artifacts (w/ vector support)
+    - name: Move artifacts (SIMD)
+      if: matrix.simd == true
+      shell: bash
       run: |
-        mkdir -p ${{ steps.strings.outputs.bin-dir }}/release
-        mv ${{ steps.strings.outputs.bin-dir }}/align_benchmark ${{ steps.strings.outputs.bin-dir }}/release/align_benchmark-x86_64-SIMD
-        mv ${{ steps.strings.outputs.bin-dir }}/generate_dataset ${{ steps.strings.outputs.bin-dir }}/release/generate_dataset-x86_64-SIMD
+        mv "${{ steps.strings.outputs.bin-dir }}/align_benchmark${{ matrix.ext }}" \
+           "${{ steps.strings.outputs.release-dir }}/align_benchmark-${{ matrix.label }}-SIMD${{ matrix.ext }}"
+        mv "${{ steps.strings.outputs.bin-dir }}/generate_dataset${{ matrix.ext }}" \
+           "${{ steps.strings.outputs.release-dir }}/generate_dataset-${{ matrix.label }}-SIMD${{ matrix.ext }}"
 
     - name: Clean
+      if: matrix.simd == true
       run: cmake --build ${{ steps.strings.outputs.build-dir }} --target clean
 
-    - name: Configure CMake (w/o vector support)
+    - name: Configure CMake (Scalar)
       run: >
         cmake -B ${{ steps.strings.outputs.build-dir }}
         -DQUICKED_NONATIVE=ON
         -DQUICKED_FORCESCALAR=ON
+        ${{ matrix.os == 'macos-14' && '-DCMAKE_APPLE_SILICON_PROCESSOR=arm64' || '' }}
         -S ${{ github.workspace }}
 
-    - name: Build (w/o vector support)
+    - name: Build (Scalar)
       run: cmake --build ${{ steps.strings.outputs.build-dir }} --config Release --parallel 4
 
-    - name: Move the target artifacts (w/o vector support)
+    - name: Move artifacts (Scalar)
+      shell: bash
       run: |
-        mkdir -p ${{ steps.strings.outputs.bin-dir }}/release
-        mv ${{ steps.strings.outputs.bin-dir }}/align_benchmark ${{ steps.strings.outputs.bin-dir }}/release/align_benchmark-x86_64
-        mv ${{ steps.strings.outputs.bin-dir }}/generate_dataset ${{ steps.strings.outputs.bin-dir }}/release/generate_dataset-x86_64
+        mv "${{ steps.strings.outputs.bin-dir }}/align_benchmark${{ matrix.ext }}" \
+           "${{ steps.strings.outputs.release-dir }}/align_benchmark-${{ matrix.label }}${{ matrix.ext }}"
+        mv "${{ steps.strings.outputs.bin-dir }}/generate_dataset${{ matrix.ext }}" \
+           "${{ steps.strings.outputs.release-dir }}/generate_dataset-${{ matrix.label }}${{ matrix.ext }}"
+
+    - name: Upload per-platform artifacts
+      uses: actions/upload-artifact@v4
+      with:
+        name: release-${{ matrix.label }}
+        path: ${{ steps.strings.outputs.release-dir }}/*
+
+  Upload-Release-Binaries:
+    runs-on: ubuntu-latest
+    needs: Build-Release-Binaries
+
+    steps:
+    - name: Download all release artifacts
+      uses: actions/download-artifact@v4
+      with:
+        pattern: release-*
+        merge-multiple: true
+        path: ./all_binaries
 
-    - name: Upload the artifacts
+    - name: Upload the artifacts to the release
       uses: skx/github-action-publish-binaries@master
       env:
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
-        args: '${{ steps.strings.outputs.bin-dir }}/release/*'
+        args: './all_binaries/*'

.github/workflows/python_wheels.yaml

@@ -27,3 +27,33 @@ jobs:
           name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
           path: ./wheelhouse/*.whl
 
+  make_sdist:
+    name: Make SDist
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+
+    - name: Build SDist
+      run: pipx run build --sdist
+
+    - uses: actions/upload-artifact@v4
+      with:
+        name: cibw-sdist
+        path: dist/*.tar.gz
+
+  upload_all:
+    needs: [build_wheels, make_sdist]
+    environment: PyPI
+    permissions:
+      id-token: write
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/download-artifact@v4
+      with:
+        pattern: cibw-*
+        path: dist
+        merge-multiple: true
+
+    - uses: pypa/gh-action-pypi-publish@release/v1

pyproject.toml

@@ -30,14 +30,17 @@ license = "MIT"
 license-files = ["LICENSE"]
 keywords = ["edit", "distance", "levenshtein", "align", "sequence", "bioinformatics"]
 classifiers = [
-    "Development Status :: 4 - Beta",
+    "Development Status :: 5 - Production/Stable",
     "Intended Audience :: Developers",
     "Intended Audience :: Science/Research",
     "Programming Language :: Python :: 3",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
 ]
-version = "1.1a1"
+version = "1.2"
 requires-python = ">= 3.8"
+dependencies = [
+    "py-cpuinfo>=9.0.0",
+]
 
 [project.urls]
 Homepage = "https://github.com/maxdoblas/QuickEd"