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Welcome to the web page for the 35th Project Week!

This event will be held virtually June 28-July 2, 2021.

History

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience.

Logistics

  • Dates: June 28-July 2, 2021.
  • Location: THE INTERNET

Attendees

  • Step 0: REGISTER here
  • Step 1: Sign-up on the discourse forum to get updates and ask questions.
  • Step 2: Add a project title and people names in this Google document (before Tuesday, June 15)
  • Step 3: Create a project webpage (see Projects section below) (before Tuesday June 22)
  • Step 4 (optional): Join the Discord server to help prepare and work on your project: Invite Link

Preparation Meetings

We are holding prepration meetings every Tuesday at 10am ET starting May 18th using this Zoom link

  • May 18 - Kickoff
  • May 25 - Project week logistics
  • June 1 - AI-assisted annotations
    • (KnowledgeVis, Florida) Curt Lisle (Overview, user experience with MONAI, application to lung/cancer segmentation)
    • (UCL, London) Fernando Perez Garcia, Andres Diaz Pinto (MONAILabel demo)
    • (Queens U, Kingston) Andras Lasso, Tamas Ungi (Deep learning based annotation in Slicer, migration to MONAI?)
  • June 8 - Systems for Image-Guided Surgery
    • Alexandra Golby, Boston
    • Juan Ruiz, Las Palmas, Gran Canaria
    • Gabor Fichtinger, Kingston, Ontario
    • Clare Tempany, Boston
    • Jay Jagadeesan, Boston
  • June 15 - Systems for Image-Guided Surgery (continued) and Rendering
    • Simon Drouin
    • Csaba Pinter
  • June 22 - Review of projects and project pages

Preliminary Agenda

<iframe src="https://calendar.google.com/calendar/embed?src=kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com&ctz=Atlantic&mode=WEEK&dates=20210628%2f20210702" style="border: 0" width="800" height="600" frameborder="0" scrolling="no"></iframe>

How to add this calendar to your own?

Monday June 28

  • 9am-9:45am Breakout Session: Augmented reality/Virtual reality (Javier Pascau)
  • 10am-12pm: Introduction and Project Presentations
  • 12pm-1pm BREAK
  • 1-5pm: Work in Project Teams (Discord)

Tuesday June 29

  • 8am-9:30am: For First Timers:
    • Annotations in Slicer (Andras Lasso)
    • MONAI Introduction (Sachi Alle)
    • MONAILabel Demo (Andres Diaz Pinto)
  • 10am-12noon Breakout Session:
    • What is new in Slicer
    • Questions from Slicer Users and Developers (“Live” Discourse)
  • 12-1pm BREAK
  • 1-2pm: Breakout session: Common interface for deep learning models (Fernando Perez-Garcia)
  • 1-5pm: Work in Project Teams (Discord)

Wednesday June 30

  • 8am-9:30am: For First Timers:
    • Image-Guided Brain Tumor Surgery (Alexandra Golby, MD)
    • Affordable IGT (Gabor Fichtinger, PhD)
    • Prostate Interventions (Clare Tempany, MD)
    • Molecular Guidance for Clinical Decision Making(Nathalie Agar, PhD)
  • 10am-12noon Breakout Session: Image Guided Surgery Systems
  • 12-1pm BREAK
  • 1-5pm: Work in Project Teams (Discord)

Thursday July 1

  • 8am-9:30am - For First timers:
    • OHIF and DICOMWeb (Steve Pieper, PhD)
    • DICOM for Digital Pathology applications (Marcus Hermann, PhD)
    • Imaging Data Commons (Andrey Fedorov)
  • 10am-12noon Breakout Session: An Open Science Approach to Atlases of the Human Brain Morphology (Sylvain Bouix)
  • 12-1pm BREAK
  • 1-5pm: Work in Project Teams (Discord)

Friday July 2

  • 10am-11:30pm: Results Presentations
  • 11:30-12:30pm: Closing Discussions and Adjourn

Projects (How to add a new project?)

VR/AR and Rendering

  1. PRISM volume rendering (Simon Drouin, Steve Pieper, Kyle Sunderland, Andrey Titov, Rafael Palomar)
  2. SlicerVR build and in-VR widgets (Csaba Pinter, Adam Rankin, Jean-Christophe Fillion-Robin)
  3. Interactive Slice Intersections (David García-Mato, Kyle Sunderland, Csaba Pinter)
  4. VR for Birth Delivery Training (Mónica García-Sevilla, David García-Mato, Abián Hernández-Guedes, Juan Ruiz Alzola, Javier Pascau, Nayra Pumar, Csaba Pinter)
  5. VR display plugin for PyDBS using a zSpace device (Marine Camba, Sara Fernandez Vidal, Sinan Haliyo)
  6. AR in Slicer (Alicia Pose Díez de la Lastra, Javier Pascau, Csaba Pinter)

IGT

  1. ROS2 - 3D Slicer Integration (Junichi Tokuda, Tamas Ungi, Axel Krieger, Simon Leonard, Mark Fuge)
  2. Low-Cost neuronavigation (Julie Alvarez (Neurotrauma Center), Gabriel Vargas Grau (Universidad de Santander), Juan Camilo Gamboa (Mc Gill University), Andrés Gamboa (Neurotrauma/Universidad Politécnica de Valencia/))
  3. GPU Rigid Registration (Gelel Rezig, Houssem Eddine Gueziri, Simon Drouin)
  4. Slicer module for planning MR-guided focal cryoablation of prostate cancer (Pedro Moreira)
  5. IGT training material for francophone countries (Nayra Pumar, Mohamed El Moctar Septy, Yahya Tfeil, Asmaa Skareb, Marilola Afonso, Juan Ruiz Alzola)
  6. Slicer-Liver: planning liver resections in 3D Slicer (Rafael Palomar, Gabriella d'Albenzio, Ole Vegard Solberg, Geir Arne Tangen)

Deep learning and segmentation

  1. DeepHeart MONAILabel integration (...)
  2. Registration for Deep Learning (Curtis Lisle, Neha Goyal, Greg Sharp)
  3. Development of Deep Learning Segmentation for Spines with Metastaic Disease (Ron Alkalay, Curtis Lisle, Andres Diaz-Pinto)
  4. Integration of PyTorch and Slicer

Cloud, open data and annotation

  1. SlicerOnDemand (Steve Pieper, Curt Lisle)
  2. NCI Imaging Data Commons (Andrey Fedorov, Markus Herrmann, Theodore Aptekarev, Steve Pieper, Ron Kikinis)
  3. mpReview: Development of a streamlined Slicer module for (manual) image annotation (Andrey Fedorov, Dora Szasz, Masoom Haider, Aytek Oto, Andras Lasso, Fiona Fennessy)
  4. DICOM-SR: Extending DICOM-SR support in dcmjs and adding test cases (Emel Alkim, Steve Pieper, Andrey Fedorov)

Registrants

Do not add your name to this list below. It is maintained by the organizers based on your registration. Register here.

List of registered participants so far (names will be added here after processing registrations):

  1. Mónica García Sevilla , Universidad de Las Palmas de Gran Canaria , Gran Canaria , Spain
  2. ZhenXiao Yu , University Of Western Ontario , Ontario , Canada
  3. Shreyas Chandra Sekhar , WPI , CA , USA
  4. Tina Kapur , Brigham and Women's Hospital and Harvard Medical School , MA , United States
  5. Sam Horvath , Kitware , North Carolina , United States
  6. Steve Pieper , Isomics, Inc. , MA , US
  7. Simon Oxenford , Charite Berlin , Berlin , Germany
  8. Theodore Aptekarev , None , Moscow/Tel Aviv , Israel/Russia
  9. Samuelle St-Onge , École de Technologie Supérieure , Montreal , Canada
  10. Csaba Pinter , Ebatinca / Pixel Medical , Canarias , Spain
  11. Miguel Xochicale , King's College London , London , UK
  12. Thibault Pelletier , Kitware , Rhône-Alpes , France
  13. Saima Safdar , UWA , Western australia , Australia
  14. Juan Ruiz-Alzola , University of Las Palmas de Gran Canaria , Canarias , Spain
  15. David García Mato , Ebatinca S.L. , Las Palmas , Spain
  16. Mario Banfoldy , Banfoldy and Partners , SP , Brasilien
  17. Simon Drouin , École de Technologie Supérieure , Montreal , Canada
  18. Ron Kikinis , Harvard Medical School , Boston , United States
  19. Herbert Shin , University of Western Ontario , , Canada
  20. Ahmedou Moulaye IDRISS , Faculty of Medicine / University of Nouakchott Al Aasriya , Nashville , Mauritania
  21. Ron Alkalay , Beth Israel Deaconess Medical Center , Bosotn , US
  22. Alicia Pose Díez de la Lastra , Universidad Carlos III de Madrid , Leganés , España
  23. Chenglin Zhu , Cornell University , Ithaca , Study in US, live in China
  24. Jarrett Rushmore , BU/BWH/MGH , Boston , USA
  25. Walia Farzana , Old Dominion University , Norfolk , United States of America
  26. Mamadou Samba Camara , University Cheikh Anta Diop of Dakar , Dakar , Senegal
  27. Fernando Pérez-García , UCL & King's College London , , United Kingdom
  28. Curtis Lisle , KnowledgeVis, LLC , Altamonte Springs , United States
  29. Tamas Ungi , Queen's University , Kingston , Canada
  30. Andras Lasso , PerkLab, Queen's University , Kingston , Canada
  31. Junichi Tokuda , Brigham and Women's Hospital , Boston , United States
  32. Maximilian Fischer , German Cancer Research Center , , Germany
  33. Marilola Afonso , Universidad de Las Palmas de Gran Canaria , Las Palmas de Gran Canaria , Spain
  34. Étienne Léger , Concordia University , Montréal , Canada
  35. Idafen Santana-Perez , University of Las Palmas de Gran Canaria , Las Palmas de Gran Canaria , Spain
  36. Loraine Franke , University of Massachusetts Boston , Boston , United States
  37. Varun Kumar Agarwal , Bareilly International University , Bareilly , India
  38. Christian Herz , Children's Hospital of Philadelphia , , United States
  39. Mohamed El Moctar SEPTY , Medical School of Nouakchott- UNA , Nouakchott , Mauritania
  40. TFeil Yahya , Faculty of Medicine of University of Nouakchott Al Aasriya , Nouakchott , Mauritania
  41. Joshua Bierbrier , McGill University , Montreal , Canada
  42. Leah Groves , Western University , London , Canada
  43. Alfredo Morales Pinzon , BWH , Boston , United States
  44. Sylvain Bouix , BWH , Boston , USA
  45. Ahmedou Moulaye IDRISS , Faculty of Medicine - University Nouakchott Al Aasriya , Nouakchott , Mauritania
  46. Sonia Pujol , Brigham and Women's Hospital, Harvard Medical School , Boston , USA
  47. Raymond Yang , University of Massachusetts Boston , Edison , United States of America
  48. Sarah Frisken , Brigham and Women's Hospital , Boston , USA
  49. Pedro Moreira , Brigham and Women's Hospital , Boston , USA
  50. Rebecca Hisey , Queen's University , Kingston , Canada
  51. Andrey Titov , École de technologie supérieure , Saint-Bruno-de-Montarville , Canada
  52. Li Zhenzhu , HuaMei Hospital, University of Chinese Academy of Sciences , NingBo , China
  53. Ed Yeterian , Colby College , Pineville , USA
  54. Renzo Phellan Aro , McGill University , Montreal , Canada
  55. Fahd Derkaoui Hassani , Cheikh Zaid international University Hospital / UIASS , Rabat , Morocco
  56. Elizabeth Kenneally , Tufts University , Somerville , United States
  57. Lidia Al-Zogbi , Johns Hopkins University , Baltimore , United States
  58. Andrey Fedorov , Brigham and Women's Hospital , Cambridge , United States
  59. Jayender Jagadeesan , Brigham and Women's Hospital , Boston , US
  60. Gelel Rezig , Ecole de Technologie Supérieure , Montréal , Canada
  61. Souleymane Diao , Cheikh Anta Diop University , Dakar , Sénégal
  62. Rafael Palomar , Oslo University Hospital / NTNU , Oslo , Norway
  63. Gabriella d' Albenzio , Oslo University Hospital , Oslo , Norway
  64. Ole Vegard Solberg , SINTEF , Trondheim , Norway
  65. Mauro I. Dominguez , M3Dical , Hughes , Argentina
  66. Adam Rankin , Robarts Research Institute , London , Canada
  67. Javier Pascau , Universidad Carlos III de Madrid , Madrid , Spain
  68. Yoga Balagurunathan , Moffitt Cancer Center , Tampa , USA
  69. Zhouping Wei , Moffitt Cancer Center , Tampa , US
  70. Abián Hernández , Universidad de Las Palmas de Gran Canaria (ULPGC) , Las Palmas de Gran Canaria , Spain
  71. Andinet Enquobahrie , Kitware , CARY , United States
  72. Andrés Gamboa , Neurotrauma Center/Universidad Politécnica de Valencia , Bucaramanga/Valencia , Colombia/España
  73. Marine CAMBA , CENIR, Paris Brain Institute , Paris , France
  74. Teodora Szasz , The University of Chicago , Chicago , United States
  75. Geir Arne Tangen , SINTEF , Trondheim , Norway
  76. John Witt , Georgetown University, CHOP , Philadelphia , United States
  77. Andres Diaz-Pinto , KCL , London , United Kingdom
  78. Masoom Haider , University of Toronto , Toronto , Canada
  79. Neha Goyal , University of Massachusetts Boston , Boston , United States
  80. Batuhan Gundogdu , University of Chicago , Chicago , United States
  81. Caio A Neves , University of Brasilia , Brasilia , Brazil

Statistics