Implement an Efficient Algorithm for Capped-Depth BAM Downsampling#118

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adimascf wants to merge 14 commits intombhall88:mainfrom

adimascf:subsampling-aln/sweepline

Commits on Jan 19, 2026

Commits on Jan 25, 2026

refactor: switch from rust-htslib to noodles for alignment I/O
adimascf
committed

Commits on Jan 26, 2026

perf: optimise noodles implementation for sweep line
adimascf
committed

Commits on Jan 28, 2026

perf: optimise random access in run_fecth() with batch caching
adimascf
committed

Commits on Feb 3, 2026

Commits on Feb 12, 2026

fix: implement two iteration strategy to handle paired-end illumina data
adimascf
committed

Commits on Feb 13, 2026

refactor: refactored the repeated code blocks into functions
adimascf
committed