gadgetron-python-demo

for fun and runable

prepare env (prefer in mini conda)

pip install gadgetron gadgetron-dataflow-monitor ismrmrdviewer

start gadgetron first

gadgetron

demo time

full recon by python (from gadgetron-python)

gadgetron_ismrmrd_client -f testdata.h5 -C gadgetron_python_sample.xml
ismrmrdviewer out.h5

passthrough

gadgetron_ismrmrd_client -f testdata.h5 -C passthough_demo.xml

datflow monitor

gadgetron_ismrmrd_client -f testdata.h5 -C dataflow_monitor.xml

plot image and save

gadgetron_ismrmrd_client -f testdata.h5 -C plotsave_demo.xml
ismrmrdviewer out.h5

dataflow monitor and plot image and save

gadgetron_ismrmrd_client -f testdata.h5 -C dataflow_monitor_plotsave_demo.xml
ismrmrdviewer out.h5

python debug tips

if you want to debug you python, you can start your python youself, and tell gadgetron to connect to it like:

python  plotsave_demo.py # you can start anywhere like debug in Pycharm 
gadgetron_ismrmrd_client -f testdata.h5 -C plotsave_demo_start_by_hand.xml
ismrmrdviewer out.h5