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Always add indices to the sample #283

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Always add indices to the sample #283

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21 changes: 10 additions & 11 deletions viscy/data/triplet.py
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Original file line number Diff line number Diff line change
Expand Up @@ -309,17 +309,16 @@ def __getitems__(self, indices: list[int]) -> list[TripletSample]:
if self.return_negative:
for sample, negative_patch in zip(samples, negative_patches):
sample["negative"] = negative_patch
else:
for sample, (_, anchor_row) in zip(samples, anchor_rows.iterrows()):
# For new predictions, ensure all INDEX_COLUMNS are included
index_dict = {}
for col in INDEX_COLUMNS:
if col in anchor_row.index:
index_dict[col] = anchor_row[col]
elif col not in ["y", "x", "z"]:
# Skip y and x for legacy data - they weren't part of INDEX_COLUMNS
raise KeyError(f"Required column '{col}' not found in data")
sample["index"] = index_dict
for sample, (_, anchor_row) in zip(samples, anchor_rows.iterrows()):
# For new predictions, ensure all INDEX_COLUMNS are included
index_dict = {}
for col in INDEX_COLUMNS:
if col in anchor_row.index:
index_dict[col] = anchor_row[col]
elif col not in ["y", "x", "z"]:
# Skip y and x for legacy data - they weren't part of INDEX_COLUMNS
raise KeyError(f"Required column '{col}' not found in data")
sample["index"] = index_dict
return samples


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