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Pull requests: metagenomics/metagenomics-tk

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Pull requests list

chore(fragmentRecruitment): replace shell with script
#416 opened Mar 11, 2026 by Proton-NTA Loading…
Replaced shell with script for binning module
#415 opened Mar 11, 2026 by Proton-NTA Loading…
Replaced shell with script for plasmids module
#414 opened Mar 11, 2026 by Proton-NTA Loading…
feat(binning): add semibin2
#411 opened Mar 6, 2026 by pbelmann Loading…
Gene detection and annotation of eukaryotic sequences
#410 opened Mar 4, 2026 by pbelmann Loading…
chore(deps): update quay.io/biocontainers/gtdbtk docker tag to v2.4.0--pyhdfd78af_2
#387 opened Feb 24, 2025 by renovate-check bot Loading…
1 task
chore(deps): update metabat/metabat docker tag to v2.17
#386 opened Feb 24, 2025 by renovate-check bot Loading…
1 task
fix(binning): metabinner should exit gracefully if not bins could be formed
#336 opened Sep 18, 2023 by pbelmann Loading…
Fix magscot edge case
#333 opened Sep 17, 2023 by pbelmann Loading…
chore(deps): update quay.io/biocontainers/porechop docker tag to v0.2.4--py39hc16433a_4
#305 opened May 12, 2023 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/megahit docker tag to v1.2.9--h8b12597_0
#293 opened Mar 23, 2023 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/nonpareil docker tag to v3.4.1--r42h9f5acd7_2
#287 opened Mar 7, 2023 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/rgi docker tag to v6.0.2--pyha8f3691_0
#280 opened Feb 7, 2023 by pbelmann Loading…
1 task
chore(deps): update quay.io/metagenomics/toolkit-bowtie2 docker tag to v0.1.1
#262 opened Nov 28, 2022 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/bwa-mem2 docker tag to v2.2.1--he513fc3_0
#261 opened Nov 28, 2022 by pbelmann Loading…
1 task
chore(deps): update cdiener/gapseq docker tag to v2022.07.0
#240 opened Oct 25, 2022 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/pysradb docker tag to v1.4.2--pyhdfd78af_0
#238 opened Oct 14, 2022 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/nanoplot docker tag to v1.40.2--pyhdfd78af_0
#237 opened Oct 14, 2022 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/mash docker tag to v2.3--he348c14_1
#236 opened Oct 14, 2022 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/flye docker tag to v2.9.1--py39h6935b12_0
#235 opened Oct 14, 2022 by pbelmann Loading…
1 task
chore(deps): update quay.io/biocontainers/spades docker tag to v3.15.5--h95f258a_1
#232 opened Sep 27, 2022 by pbelmann Loading…
1 task
feat(ci): save nextflow pid and tag all slurm jobs
#227 opened Sep 1, 2022 by pbelmann Loading…
chore(deps): update quay.io/biocontainers/metabinner docker tag to v1.4.3--hdfd78af_0
#168 opened Apr 15, 2022 by pbelmann Loading…
1 task
chore(deps): update dependency kiwisolver to v1.4.0
#155 opened Mar 15, 2022 by pbelmann Loading…
1 task
chore(deps): update ubuntu docker tag to v22
#154 opened Mar 10, 2022 by pbelmann Loading…
1 task
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