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Add CI coefficients for CC/MP2#226

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nabbelbabbel wants to merge 18 commits intomainfrom
jpu/ci-coeffs-from-amplitudes
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Add CI coefficients for CC/MP2#226
nabbelbabbel wants to merge 18 commits intomainfrom
jpu/ci-coeffs-from-amplitudes

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commit 613c3f2
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Mon Dec 15 09:54:19 2025 +0000

    linting

commit f27005f
Author: Jan Unsleber <18538155+nabbelbabbel@users.noreply.github.com>
Date:   Mon Dec 15 10:47:53 2025 +0100

    Update cpp/src/qdk/chemistry/data/wavefunction_containers/mp2.cpp

    Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

commit 8670453
Merge: 42cbe5c ed3dba3
Author: Jan Unsleber <18538155+nabbelbabbel@users.noreply.github.com>
Date:   Mon Dec 15 10:42:57 2025 +0100

    Merge branch 'main' into jpu/ci-coeffs-from-amplitudes

commit 42cbe5c
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Thu Dec 11 01:53:08 2025 +0000

    docs

commit 5f9d3c3
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Wed Dec 10 18:39:48 2025 +0000

    fix tests

commit 5606c62
Merge: 6f0112a ceb8ee9
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Wed Dec 10 11:35:13 2025 +0000

    Merge remote-tracking branch 'origin/main' into jpu/ci-coeffs-from-amplitudes

commit 6f0112a
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Tue Dec 9 17:02:48 2025 +0000

    remove bindings of removed ctor

commit c04c2d5
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Tue Dec 9 12:52:27 2025 +0000

    add bra to dyn correl algorithm

commit be995e1
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Tue Dec 9 10:00:38 2025 +0000

    save

commit dfa2c23
Author: Jan Unsleber <18538155+nabbelbabbel@users.noreply.github.com>
Date:   Mon Dec 8 15:11:19 2025 +0100

    Update cpp/tests/test_mp2.cpp

    Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

commit bdb54af
Author: Jan Unsleber <18538155+nabbelbabbel@users.noreply.github.com>
Date:   Mon Dec 8 15:11:03 2025 +0100

    Update cpp/include/qdk/chemistry/data/wavefunction_containers/cc.hpp

    Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

commit ae086c3
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Fri Dec 5 15:48:08 2025 +0000

    cleaning

commit 3c6416d
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Fri Dec 5 14:23:26 2025 +0000

    add rdm computation

commit 0aa60bd
Author: Jan Unsleber <janunsleber@microsoft.com>
Date:   Thu Dec 4 21:56:37 2025 +0000

    add ci coeffs from aplitudes
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Pull request overview

This PR adds CI (Configuration Interaction) coefficient generation functionality for Coupled Cluster (CC) and MP2 methods, enabling these wavefunction containers to provide determinant expansions and coefficients on demand through lazy evaluation.

Key changes:

  • Modified dynamical correlation calculators to return a 3-tuple (energy, ket_wavefunction, optional_bra_wavefunction) instead of a 2-tuple
  • Implemented CI expansion generation from CC/MP2 amplitudes by truncating the exponential ansatz at 4th order
  • Added lazy RDM computation for MP2 from CI coefficients using MACIS utilities
  • Added support for computing bra (lambda) wavefunctions in PySCF CC calculator

Reviewed changes

Copilot reviewed 20 out of 20 changed files in this pull request and generated 9 comments.

Show a summary per file
File Description
python/tests/test_pyscf_plugin.py Updated test calls to handle new 3-tuple return signature
python/tests/test_mp2.py Updated test calls to handle new 3-tuple return signature
python/tests/test_algorithms.py Updated mock calculator and tests for new 3-tuple return signature
python/src/qdk_chemistry/plugins/pyscf/coupled_cluster.py Added compute_bra setting and lambda amplitude computation support
python/src/pybind11/data/wavefunction.cpp Removed deprecated CC container constructors with RDM parameters
python/src/pybind11/algorithms/dynamical_correlation_calculator.cpp Updated return type to 3-tuple with optional bra wavefunction
docs/source/_static/examples/python/dynamical_correlation.py Updated example to use new 3-tuple return signature
cpp/tests/test_wfn_cc.cpp Added comprehensive tests for CI coefficient generation and RDM requirements
cpp/tests/test_mp2.cpp Added tests for CI expansion, lazy RDM computation, and consistency checks
cpp/tests/test_hamiltonian.cpp Updated test calls to handle new 3-tuple return signature
cpp/tests/test_coupled_cluster_calculator.cpp Updated mock and tests for new return type
cpp/src/qdk/chemistry/data/wavefunction_containers/mp2.cpp Implemented CI expansion and lazy RDM computation from amplitudes
cpp/src/qdk/chemistry/data/wavefunction_containers/cc.cpp Implemented CI expansion up to 4th order; RDMs now require lambda amplitudes
cpp/src/qdk/chemistry/data/wavefunction.cpp Added consolidate_determinants utility to merge duplicate determinants
cpp/src/qdk/chemistry/algorithms/microsoft/mp2.hpp Updated return type signature
cpp/src/qdk/chemistry/algorithms/microsoft/mp2.cpp Changed to return DynamicalCorrelationResult tuple
cpp/include/qdk/chemistry/data/wavefunction_containers/mp2.hpp Added methods for CI expansion and lazy RDM computation
cpp/include/qdk/chemistry/data/wavefunction_containers/cc.hpp Added CI expansion methods; removed RDM-accepting constructors
cpp/include/qdk/chemistry/data/wavefunction.hpp Added consolidate_determinants template function declaration
cpp/include/qdk/chemistry/algorithms/dynamical_correlation_calculator.hpp Defined DynamicalCorrelationResult type alias for 3-tuple return

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📊 Coverage Summary

Component Coverage
C++ Library 78%
Python Package 86%
Pybind11 Bindings 89%

Detailed Coverage Reports

C++ Coverage Details
------------------------------------------------------------------------------
                           GCC Code Coverage Report
Directory: cpp
------------------------------------------------------------------------------
File                                       Lines    Exec  Cover   Missing
------------------------------------------------------------------------------
include/qdk/chemistry/algorithms/active_space.hpp
                                               5       5   100%
include/qdk/chemistry/algorithms/algorithm.hpp
                                              60      55    91%   187,209,211-212,270
include/qdk/chemistry/algorithms/dynamical_correlation_calculator.hpp
                                               7       6    85%   115
include/qdk/chemistry/algorithms/hamiltonian.hpp
                                               5       5   100%
include/qdk/chemistry/algorithms/localization.hpp
                                               5       5   100%
include/qdk/chemistry/algorithms/mc.hpp       15      15   100%
include/qdk/chemistry/algorithms/mcscf.hpp
                                               6       6   100%
include/qdk/chemistry/algorithms/pmc.hpp       9       8    88%   186
include/qdk/chemistry/algorithms/scf.hpp      13      12    92%   23
include/qdk/chemistry/algorithms/stability.hpp
                                               5       4    80%   131
include/qdk/chemistry/data/ansatz.hpp          3       3   100%
include/qdk/chemistry/data/basis_set.hpp      35      30    85%   108-109,112,114,319
include/qdk/chemistry/data/configuration.hpp
                                              32      30    93%   71,119
include/qdk/chemistry/data/configuration_set.hpp
                                               3       2    66%   35
include/qdk/chemistry/data/data_class.hpp
                                               4       4   100%
include/qdk/chemistry/data/element_data.hpp
                                              18      18   100%
include/qdk/chemistry/data/hamiltonian.hpp
                                              12      12   100%
include/qdk/chemistry/data/hamiltonian_containers/canonical_four_center.hpp
                                               1       1   100%
include/qdk/chemistry/data/hamiltonian_containers/cholesky.hpp
                                               1       1   100%
include/qdk/chemistry/data/orbitals.hpp        6       6   100%
include/qdk/chemistry/data/pauli_operator.hpp
                                              88      83    94%   1203,1227,1262,1274,1288
include/qdk/chemistry/data/settings.hpp       90      68    75%   180-181,311,353,488,857,864,866,881-882,886-888,892-893,895-897,899-900,989,993
include/qdk/chemistry/data/stability_result.hpp
                                              38      38   100%
include/qdk/chemistry/data/structure.hpp       8       8   100%
include/qdk/chemistry/data/wavefunction.hpp
                                              23      17    73%   438,444,452-454,623
include/qdk/chemistry/data/wavefunction_containers/cas.hpp
                                               1       1   100%
include/qdk/chemistry/data/wavefunction_containers/cc.hpp
                                               1       1   100%
include/qdk/chemistry/data/wavefunction_containers/mp2.hpp
                                               1       1   100%
include/qdk/chemistry/data/wavefunction_containers/sci.hpp
                                               1       1   100%
include/qdk/chemistry/data/wavefunction_containers/sd.hpp
                                               1       1   100%
include/qdk/chemistry/utils/hash.hpp           4       4   100%
include/qdk/chemistry/utils/logger.hpp        41      35    85%   223-224,226,233-234,236
include/qdk/chemistry/utils/string_utils.hpp
                                              11      10    90%   41
src/qdk/chemistry/algorithms/active_space.cpp
                                             232     142    61%   35-36,40-41,45-46,116-118,143-145,147,151-154,156-159,162-163,165-168,173-174,176-179,182-184,187-189,191,194-196,218,220,224,226-229,231-232,236-239,241,243,246-249,251,253,255-256,277-278,307,310,342,347-348,350-353,355-357,359-360,363,367,369-371,413,415,417
src/qdk/chemistry/algorithms/dynamical_correlation_calculator.cpp
                                               8       8   100%
src/qdk/chemistry/algorithms/hamiltonian.cpp
                                              14      14   100%
src/qdk/chemistry/algorithms/localization.cpp
                                              15      15   100%
src/qdk/chemistry/algorithms/mc.cpp           11      11   100%
src/qdk/chemistry/algorithms/microsoft/active_space/autocas_active_space.cpp
                                              80      78    97%   103,133
src/qdk/chemistry/algorithms/microsoft/active_space/autocas_active_space.hpp
                                              16      16   100%
src/qdk/chemistry/algorithms/microsoft/active_space/entropy_active_space.cpp
                                              41      41   100%
src/qdk/chemistry/algorithms/microsoft/active_space/entropy_active_space.hpp
                                              10      10   100%
src/qdk/chemistry/algorithms/microsoft/active_space/occupation_active_space.cpp
                                              60      54    90%   46,48,81,83,101-102
src/qdk/chemistry/algorithms/microsoft/active_space/occupation_active_space.hpp
                                               6       6   100%
src/qdk/chemistry/algorithms/microsoft/active_space/valence_active_space.cpp
                                              75      63    84%   34,36,68-69,76-77,104-105,120-121,124-125
src/qdk/chemistry/algorithms/microsoft/active_space/valence_active_space.hpp
                                               9       9   100%
src/qdk/chemistry/algorithms/microsoft/cholesky_hamiltonian.cpp
                                             448     405    90%   392,410,413-414,433,443,446-447,476-477,526-527,533-535,542-543,550-551,582,585-586,601,609,611-613,759,761,773,778,792,799,862,867-868,870-871,974,980-981,984-985
src/qdk/chemistry/algorithms/microsoft/cholesky_hamiltonian.hpp
                                              11      11   100%
src/qdk/chemistry/algorithms/microsoft/hamiltonian.cpp
                                             247     230    93%   46-47,53-55,62-63,105-106,165-166,289,291,302,314,376,484
src/qdk/chemistry/algorithms/microsoft/hamiltonian.hpp
                                              10      10   100%
src/qdk/chemistry/algorithms/microsoft/localization/iterative_localizer_base.cpp
                                               5       5   100%
src/qdk/chemistry/algorithms/microsoft/localization/iterative_localizer_base.hpp
                                               8       8   100%
src/qdk/chemistry/algorithms/microsoft/localization/mp2_natural_orbitals.cpp
                                              79      74    93%   44,81,83,104,106
src/qdk/chemistry/algorithms/microsoft/localization/mp2_natural_orbitals.hpp
                                               3       3   100%
src/qdk/chemistry/algorithms/microsoft/localization/pipek_mezey.cpp
                                             169     160    94%   26,34,41,43,47,49,246,329,332
src/qdk/chemistry/algorithms/microsoft/localization/pipek_mezey.hpp
                                               6       6   100%
src/qdk/chemistry/algorithms/microsoft/localization/vvhv.cpp
                                             609     539    88%   308,310-311,424-425,448,506,633,635,640,656-659,662,672-675,678,713-715,721-725,753-756,759,781,783-785,863-867,913-917,935-938,942-945,947-949,952,1026,1089-1091,1162,1181,1184,1188,1190,1195-1196
src/qdk/chemistry/algorithms/microsoft/localization/vvhv.hpp
                                               6       6   100%
src/qdk/chemistry/algorithms/microsoft/macis_asci.cpp
                                              53      50    94%   51,139,141
src/qdk/chemistry/algorithms/microsoft/macis_asci.hpp
                                              61      61   100%
src/qdk/chemistry/algorithms/microsoft/macis_base.cpp
                                              74      58    78%   29-31,41,46,98-99,102,106-107,110-112,119-121
src/qdk/chemistry/algorithms/microsoft/macis_base.hpp
                                              61      56    91%   61-64,66
src/qdk/chemistry/algorithms/microsoft/macis_cas.cpp
                                              42      39    92%   47,104,106
src/qdk/chemistry/algorithms/microsoft/macis_cas.hpp
                                               3       3   100%
src/qdk/chemistry/algorithms/microsoft/macis_pmc.cpp
                                              79      77    97%   114,153
src/qdk/chemistry/algorithms/microsoft/macis_pmc.hpp
                                              16      16   100%
src/qdk/chemistry/algorithms/microsoft/mp2.cpp
                                             191     173    90%   33,78,82-83,93-94,97,101-102,142-143,146-147,157-158,161,165-166
src/qdk/chemistry/algorithms/microsoft/mp2.hpp
                                               2       2   100%
src/qdk/chemistry/algorithms/microsoft/scf.cpp
                                             260     241    92%   100-101,122-124,126,130-131,189,234,307,339,344,346,372-374,393,462
src/qdk/chemistry/algorithms/microsoft/scf.hpp
                                              18      18   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/core/basis_set.h
                                               9       8    88%   134
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/core/enums.h
                                              16       0     0%   29-30,39-40,45-50,61-66
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/core/eri.h
                                               6       6   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/core/exc.h
                                               3       3   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/core/moeri.h
                                               3       3   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/core/molecule.h
                                               1       1   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/core/scf_algorithm.h
                                               1       1   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/eri/eri_multiplexer.h
                                               6       3    50%   126-127,135
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/util/cache.h
                                              27      26    96%   44
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/util/class_registry.h
                                              13      13   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/util/gauxc_registry.h
                                               6       5    83%   39
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/util/gauxc_util.h
                                              21      21   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/util/int1e.h
                                               2       2   100%
src/qdk/chemistry/algorithms/microsoft/scf/include/qdk/chemistry/scf/util/singleton.h
                                              13      13   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/core/basis_set.cpp
                                             361     279    77%   33-34,92-93,97-98,146,150-154,157-161,172,183-184,188,190-191,197-198,201-206,210,212-215,217,219,223,225-226,228-229,231,248,257,265-266,313-314,335,337,342-343,345-346,348,401,406-407,415,436,458,460-461,463-465,478,480,482-485,487,490,493-494,542,544,548-549
src/qdk/chemistry/algorithms/microsoft/scf/src/core/scf.cpp
                                               7       7   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/eri.cpp
                                              35      28    80%   58-60,64-65,88-89
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/eri_df_base.cpp
                                              34      32    94%   29-30
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/eri_df_base.h
                                               2       2   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/eri_multiplexer.cpp
                                              61      37    60%   16-17,26-29,40,46-49,52-55,79,81,83-85,87-88,91,93
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/INCORE/incore.cpp
                                              40      27    67%   38,40,42,62,64,66-68,70-71,73-75
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/INCORE/incore_impl.cpp
                                              97      89    91%   43,134,136,236,238,240,288,290
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/INCORE/incore_impl_df.cpp
                                             101      59    58%   85-86,88,201,203,205-212,214-219,222,225-231,234,251,254,261-262,284,289,303-304,307,318-319,321-322,324
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/LIBINT2_DIRECT/libint2_direct.cpp
                                             178     166    93%   591,593,595,890,892-895,898,900-902
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/moeri.cpp
                                              36      34    94%   32-33
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/schwarz.cpp
                                              33      13    39%   80-81,83-88,90-93,95-98,101-102,104,106
src/qdk/chemistry/algorithms/microsoft/scf/src/eri/SNK/snk.cpp
                                              64       0     0%   36,57-59,61-64,67-69,95,97,99-101,104-107,111-113,116-118,121-124,143,145,147,164-165,167,183,187,189,195-196,198-201,203,206,208,210-212,215,217,219-221,224,226,228-229,233-234,236-237
src/qdk/chemistry/algorithms/microsoft/scf/src/exc/exc.cpp
                                              16      14    87%   42-43
src/qdk/chemistry/algorithms/microsoft/scf/src/exc/GauXC/gauxc.cpp
                                              34      25    73%   42,46-47,50-52,54,56,67
src/qdk/chemistry/algorithms/microsoft/scf/src/exc/GauXC/gauxc_impl.cpp
                                             229     163    71%   79,119,160-161,249-258,260,262-270,352-353,360-364,366,368-377,380-381,383-384,387-389,396,398-399,405-409,411,413-417,419-420,426
src/qdk/chemistry/algorithms/microsoft/scf/src/scf/cpscf.cpp
                                             231     229    99%   228,233
src/qdk/chemistry/algorithms/microsoft/scf/src/scf/guess.cpp
                                              63      63   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/scf/ks_impl.cpp
                                              81      63    77%   73,75-82,140,155-158,160-161,171-172
src/qdk/chemistry/algorithms/microsoft/scf/src/scf/scf_impl.cpp
                                             535     405    75%   73,106,112,157-158,174-175,318-319,328-331,455,459,539,576,595-597,661,700-701,705-706,715-720,730,734-737,739-746,759-763,765-768,770-771,778-779,781-786,788-793,795,803-806,816-817,828-830,841-846,849-852,855,858,860,959-961,964,966,970-971,973-977,979-982,984-985,989,991,993-1001,1004-1007,1010-1012,1014,1016
src/qdk/chemistry/algorithms/microsoft/scf/src/scf/scf_impl.h
                                              20      16    80%   98-100,113
src/qdk/chemistry/algorithms/microsoft/scf/src/scf/scf_solver.cpp
                                              82      54    65%   35,37,51,55-59,66,68,90,92-93,101-103,111-113,126-128,131-133,141-143
src/qdk/chemistry/algorithms/microsoft/scf/src/scf/soad.cpp
                                              15       0     0%   189,192-204,208
src/qdk/chemistry/algorithms/microsoft/scf/src/scf_algorithm/asahf.cpp
                                             277     268    96%   48,50,67-68,100,270,465-466,517
src/qdk/chemistry/algorithms/microsoft/scf/src/scf_algorithm/diis.cpp
                                             133     128    96%   136,317-320
src/qdk/chemistry/algorithms/microsoft/scf/src/scf_algorithm/diis_gdm.cpp
                                              36      36   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/scf_algorithm/gdm.cpp
                                             396     361    91%   226,249,272,443-446,449-452,478-482,487,518-522,663,666-672,803,807,894,898,900
src/qdk/chemistry/algorithms/microsoft/scf/src/scf_algorithm/line_search.h
                                              63      62    98%   60
src/qdk/chemistry/algorithms/microsoft/scf/src/scf_algorithm/scf_algorithm.cpp
                                             105      99    94%   59-60,67-70
src/qdk/chemistry/algorithms/microsoft/scf/src/util/gauxc_util.cpp
                                              85      20    23%   26-31,34-43,48-49,52-59,63-66,68,70,72-74,81-88,92-99,106-111,115-118,122-123,134-135
src/qdk/chemistry/algorithms/microsoft/scf/src/util/int1e.cpp
                                             336     226    67%   206-209,211,243,288,290-296,298-303,305-311,314-315,326,328-329,569,592,622,699,702-703,705,713,755,757-758,762-771,780,782-783,787-796,805,807-808,812-824,826-829,838,941-942,946-954,956-962,964-967,976
src/qdk/chemistry/algorithms/microsoft/scf/src/util/libint2_util.cpp
                                             181      91    50%   39,42-45,47,49-51,53-54,58-60,64-66,72,74,76-79,81-82,85-91,94-95,97-102,104-107,109-119,125-126,477,483-490,492-495,497,499,503-504,506,560,562,566-569,571-573,576,580-582,584,627
src/qdk/chemistry/algorithms/microsoft/scf/src/util/matrix_exp.cpp
                                              53      53   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/util/mpi_vars.h
                                               2       2   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/util/opt/gmresxx/arnoldi/arnoldi.h
                                              12      12   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/util/opt/gmresxx/arnoldi/arnoldi_gmres.h
                                             202     168    83%   53-55,176,183,185-188,190-194,196,198,202,205,209,212,217-218,221,223,290,293-294,298,481-482,493,522-523,589
src/qdk/chemistry/algorithms/microsoft/scf/src/util/opt/gmresxx/linalg.h
                                              40      40   100%
src/qdk/chemistry/algorithms/microsoft/scf/src/util/timer.h
                                              29      29   100%
src/qdk/chemistry/algorithms/microsoft/stability.cpp
                                             316     293    92%   191-192,321-323,411,413,430,433-442,446,448,452,454,489
src/qdk/chemistry/algorithms/microsoft/stability.hpp
                                              13      13   100%
src/qdk/chemistry/algorithms/microsoft/utils.cpp
                                             248     171    69%   45-46,52,54,111-112,123-124,126-127,133,135,138-139,141,143-147,150-151,182,184,186,190-191,195,198-205,207-209,211,214-218,220-225,227-229,231,234-235,237,240-245,251,253-255,258-262,387-388,427,429
src/qdk/chemistry/algorithms/pmc.cpp           8       8   100%
src/qdk/chemistry/algorithms/scf.cpp           7       7   100%
src/qdk/chemistry/algorithms/stability.cpp
                                               6       6   100%
src/qdk/chemistry/data/ansatz.cpp            553     380    68%   26,36,39,46-48,50-51,53,55-56,58-60,62,69,84,99,104-105,107-108,115,120,122,148,150,207,209,280,295,297,302-303,336-340,345,347,357,359,362,364,374,376,379,381,394,396,401,403-404,410,412,417,419-420,434,436,441,443-444,449,451,456,458-459,461-462,464,468-469,471-472,474-475,477-478,480-484,486-487,489,492,495-500,502-503,506-508,510,513,515-516,549,559,569,579,601,608,612,626,630-631,641,651-652,659,668,684-687,690-691,694-696,698-699,701-703,719,727,744-747,782-783,792-793,804,812-813,824,835-836,843,852,869-872,875-876,879-881,883-884,886-888,894-895,906-907,931-934
src/qdk/chemistry/data/basis_set.cpp        1438    1250    86%   31,38,70,91-92,221,225,259-260,276-277,326-327,341,361,387,402,433,460,493,506-507,513-514,529-530,545-546,565,568-569,615,618-620,648,651-653,719,761,785,814,845,881,914,936,966,1006,1023,1032,1050,1067,1079,1090,1180-1181,1235,1249,1262,1276,1291,1298,1308,1310,1317,1331-1332,1465,1522-1523,1537-1539,1541-1542,1548-1551,1560-1561,1727,1791-1792,1805-1806,1906,1914,1926,1962-1966,1968-1970,1973-1977,2010,2024-2028,2031-2040,2042-2045,2047-2051,2053-2055,2058-2061,2065-2066,2068,2070-2074,2077-2078,2082-2086,2090-2092,2098-2101,2103-2105,2108,2110,2112,2132-2133,2142-2143,2151-2153,2160-2161,2181-2182,2184,2201-2203,2268-2269,2271-2276,2282,2390
src/qdk/chemistry/data/configuration.cpp     279     171    61%   67,167,170,172-173,176-177,179-180,183-184,186,190,194-195,204,210,236-238,266-268,271-272,274-283,285,287,289-292,294-295,297,299-300,302-304,307-308,310-311,313,315-316,318-325,327,329,331-334,336-337,341-342,344-348,351-352,354-355,358-359,361-368,370-371,373-381,421-422,432,434
src/qdk/chemistry/data/configuration_set.cpp
                                             328     209    63%   33-34,85-87,90-92,234,247,272-277,287-288,331-333,350-354,356,376-377,400-402,421,425,427,429,431-434,436-437,439,441-442,444-447,450-451,453-455,458-463,465-466,468-478,480,482,484-487,489-490,494-495,497-501,503,506-508,510-514,517-524,526-527,529-540
src/qdk/chemistry/data/filename_utils.hpp
                                              44      26    59%   30-33,35-36,51-53,72-75,77-78,93-95
src/qdk/chemistry/data/hamiltonian.cpp       463     319    68%   38,43-44,65,70-71,79,92,94-96,99-101,105-112,129,137,157-159,191-192,210-214,229-233,238,240,246,248,271-284,286,289-290,293-296,298-301,304-307,309-312,316-319,321-324,327-331,333-336,338-341,343-346,349-350,356,367,376-377,392,395-396,428,441,453,466,479,492,499,517,535,542,549,556-558,564,575-576,596-597,613-614,622-623,648-652,681,683-684,747-749
src/qdk/chemistry/data/hamiltonian_containers/canonical_four_center.cpp
                                             493     428    86%   38-39,67-68,98,110,128-129,156,163,169-171,204-205,213,282,315,355,359,367,379,391,397-398,429,438,443-444,449-450,468,476,483-490,493-500,520-522,603-604,613-614,640,662,727-728,742,754,757,762,765
src/qdk/chemistry/data/hamiltonian_containers/cholesky.cpp
                                             243     173    71%   62-67,98,102,110,122,134,140-141,169-170,172,181,186-187,192-193,206-207,210-213,219,235-242,245-252,265,268,272-274,302-303,312-313,339,361,378,388-390,392-394,400-401,407-408,425,428,432-433
src/qdk/chemistry/data/hdf5_error_handling.hpp
                                              10       3    30%   20-21,23,25-26,28-29
src/qdk/chemistry/data/hdf5_serialization.cpp
                                             240     119    49%   13,15-22,24,26-32,34,36-44,46,48-56,65-67,69-71,73-74,77-79,82-85,95,98,106-109,111-113,115-116,119-121,124-127,138,141,143-150,153-160,238-240,249-251,253-255,258-260,277-280,282-286,288-289,308-310,312-316,318-319
src/qdk/chemistry/data/json_serialization.cpp
                                             177      86    48%   29,38,45-47,57,64-68,70-71,83,90-92,94-98,100,102-103,105,114,120-121,128-129,131,133-134,136-139,141,143-146,148-149,152-153,155,163-164,173,178-179,188-189,196,201,210,212,214,216-217,219-222,225-229,231-236,246-249,252-256,260-264
src/qdk/chemistry/data/orbitals.cpp         1177     915    77%   106-107,128,144-145,151-152,156-157,178,180,237,251,292,307,321,363,373,377,400,403,405-406,409-413,416-417,421-424,426-427,429,431,433-434,437-440,443,447,449,453,455,457-458,461-467,470-471,474-475,477-478,480,482,484-485,488-492,495,498,500,563-567,570-571,573-574,576-577,580-581,584,586,589-590,592-593,595-596,599-601,604,606,609-610,612-613,615-616,619-620,623,625,665,668,691,759,770,776,781,808,818,862-866,904,917,929,942,962,980,989,1065-1068,1083-1084,1109-1113,1121-1122,1157,1181-1182,1191-1192,1198-1199,1205-1206,1208-1209,1212-1213,1215-1216,1229,1231-1232,1236-1237,1243,1285-1286,1314,1320,1364-1368,1396-1397,1399-1403,1406,1409,1411,1414,1416,1419,1421-1423,1425-1427,1430-1432,1434-1436,1438-1441,1460-1462,1465-1467,1470-1472,1534-1535,1564-1566,1581-1583,1617-1618,1630-1631,1789-1793,1806-1807,1810,1813-1814,1817-1819,1821,1860,1897,1912-1914,1963-1964,1999-2000,2006-2007,2013-2014,2016-2017,2020-2021,2023-2024,2031,2047-2048
src/qdk/chemistry/data/pauli_operator.cpp
                                             756     683    90%   60,63,87-88,190,202-203,224,397,407,421-423,517,555-557,559-561,577-579,581-583,606,609,721,806,818,820-821,855,860-862,877,882-884,912,938-942,944,946,951,956,996,1014-1016,1029,1036-1037,1039-1044,1062,1073-1076,1202,1222,1300,1343
src/qdk/chemistry/data/settings.cpp         1106     554    50%   23,27,55-64,66-81,88-93,96-99,101-105,107-111,113,115-118,120-125,127-131,133-143,147-156,169,173,210,222-225,227-229,232-236,238-239,241-243,245-246,248-249,292-293,296,311,342-343,346-348,350-355,357,359-364,367,387-391,394-395,398,400,406,408,410,414,416,420,464-465,467,469,471-472,474-477,481-482,484-486,489-490,494-496,499-501,505,507,510-515,520-524,526-536,538-541,543-547,549-552,556,560-563,567-571,575-578,581-585,587-588,590,592-595,597-599,601-602,604-606,608,610-612,614-618,621-625,627,629-631,633-635,637-641,644-648,650,652-654,657-659,661,664-666,669-670,673-680,682-683,685-686,689-690,692-698,701-707,711,714-715,718-719,722-723,726-727,730-734,736,738,740-741,743-746,748-749,751-752,754-757,759-760,762,764-767,770,772-775,779-784,788-789,791,793-796,800,803-804,817,823,826,831-833,836,844,848,865,869-870,887-890,899,902,974-975,987,989,1137,1139-1142,1145,1147-1148,1154-1155,1158-1163,1165,1169,1171,1176,1180-1182,1188,1192,1195-1196,1201,1203-1205,1209,1254,1261,1279,1330-1332,1362,1368-1371,1393-1394,1429-1430,1432,1461-1463,1482-1487,1513-1515,1517,1519-1520,1523-1525,1527-1529,1535,1556-1563,1566-1569,1625,1653,1668-1670,1674-1684,1686-1691,1693-1695,1697-1703,1705-1707,1709,1711,1713-1717,1719-1723,1725-1727,1729-1730,1732-1739,1741-1750,1752-1754,1756-1758,1774
src/qdk/chemistry/data/stability_result.cpp
                                             317     292    92%   25,32,42,176,213,218,271,281,299,315,344,346,350,356,379,419,421,425,451,458,503-507
src/qdk/chemistry/data/structure.cpp         761     703    92%   86,101,115-116,127,140,159,176-177,204,245-246,295,479,492,512,530,649,665,802,816,964-966,974-975,985,995-996,1018-1019,1027,1055-1057,1063,1076,1122-1123,1126,1132-1135,1138-1147,1151-1153,1156
src/qdk/chemistry/data/wavefunction.cpp     1340    1144    85%   45,65,170,173,181-183,268-269,286,308-312,314-318,321,341-346,349,393,456,469,489,494,505-508,511-520,547-550,552-553,568,570,592,594,607-608,610,635,637,650,652,670,672,903-907,1070,1084,1100,1102,1107,1109,1131-1132,1167-1168,1171,1174-1175,1178-1180,1183,1199-1201,1203-1204,1215,1217,1220-1221,1242-1245,1247,1282,1284-1285,1310,1327,1453,1532-1535,1563,1570,1576,1583,1599,1605-1607,1613,1624,1654-1655,1670-1671,1678-1679,1699,1704-1705,1711,1722,1758,1846-1847,1857-1858,1885,1920-1921,1951-1952,1993-1994,1997,2000-2001,2004-2006,2009,2033,2035,2038-2039,2047-2049,2067-2069,2071-2072,2078-2081,2084-2094,2096-2097,2099-2102,2105-2108,2110-2112,2114-2115,2117-2118
src/qdk/chemistry/data/wavefunction_containers/cas.cpp
                                             250     197    78%   74-75,77-80,82-83,85-86,88,90-91,93-94,96-97,99,114,159-160,164,166,170,172,176-177,189-191,197,199-202,205-208,225-226,229-230,335-337,357,375-376,385,396,419-420
src/qdk/chemistry/data/wavefunction_containers/cc.cpp
                                             878     525    59%   48,52,57,59,62,66,71-72,74-77,79,87-88,122-127,153-160,169-175,203-204,206-220,222-224,226-228,231,233-234,250,258-259,261,267,277,287,299,319,324,326-328,331-334,337,339-340,343,345-349,351-352,354-355,358-359,381-383,385-387,389-391,393-395,397-399,425,432,463-466,528-529,595-596,599,601,603,606-607,609-610,612,615,617-620,622-624,627-628,630,633,637,639-640,643,687,696-697,699,705-706,708-709,716,728,737-738,747-748,754,790,800,810,820,830,841,940-950,952-956,969-979,981,983-985,1058-1069,1071-1083,1085-1091,1093-1100,1115-1126,1128-1140,1142-1148,1150-1156,1171-1181,1183-1195,1197-1200,1202,1204-1207,1223-1232,1234-1246,1248-1251,1253-1257,1322-1324,1326-1327,1330,1332-1333,1335,1337-1338,1342-1344
src/qdk/chemistry/data/wavefunction_containers/mp2.cpp
                                             608     419    68%   32,36,40-41,45-47,60-62,78,85,110,150-151,210-211,283,288,290-292,295-297,300-303,306-311,313-319,321-323,344,407-408,438-439,447,460-462,464,468-470,472,505,514-515,517,523-524,526-527,534,546,555-556,576,593-594,597-598,601,603-609,611-614,616,618,620,622-628,630-633,635,637,639,641-647,649-652,654,658-667,673-682,688-697,704-706,708-709,713,715-716,718-720,724-727,729,895,901,903,934-935,938-939,943,945,976,993,1027,1051,1053,1058,1062-1072
src/qdk/chemistry/data/wavefunction_containers/sci.cpp
                                             211     174    82%   76-77,79-82,84-85,87-88,90,92-93,95-96,98-99,101,115,149,151,153-154,164-165,168-169,258-260,280,298-299,308,319,342-343
src/qdk/chemistry/data/wavefunction_containers/sd.cpp
                                             399     336    84%   17,42-46,54,56-60,111,113,118,120,136-137,140,143-144,156,158,161-162,200,202,205-206,275,277,280-282,309,311,314,316,369,371,467,497-498,501,511-512,515,562,571,577,591,599-602,646-647,664-665,683-684,694-695
src/qdk/chemistry/utils/logger.cpp            98      93    94%   184-186,205,250
src/qdk/chemistry/utils/orbital_rotation.cpp
                                              93      56    60%   60-62,140-142,145,149-150,152,154-155,176,178,180,182,185-186,188,192-193,196-197,200,202-203,205,208-211,214,218-219,221,223-224
src/qdk/chemistry/utils/valence_space.cpp
                                              43      37    86%   60-63,79,83
------------------------------------------------------------------------------
TOTAL                                      20926   16509    78%
------------------------------------------------------------------------------
Python Coverage Details
src/qdk_chemistry/data/circuit_executor_data.py                                                     46      0   100%
src/qdk_chemistry/data/encoding_validation.py                                                       13      0   100%
src/qdk_chemistry/data/estimator_data.py                                                           118     16    86%
src/qdk_chemistry/data/noise_models.py                                                             202      2    99%
src/qdk_chemistry/data/qpe_result.py                                                               103      2    98%
src/qdk_chemistry/data/qubit_hamiltonian.py                                                        153      2    99%
src/qdk_chemistry/data/time_evolution/__init__.py                                                    0      0   100%
src/qdk_chemistry/data/time_evolution/base.py                                                       40     12    70%
src/qdk_chemistry/data/time_evolution/containers/__init__.py                                         0      0   100%
src/qdk_chemistry/data/time_evolution/containers/base.py                                            26      0   100%
src/qdk_chemistry/data/time_evolution/containers/pauli_product_formula.py                           80      0   100%
src/qdk_chemistry/data/time_evolution/controlled_time_evolution.py                                  46      8    83%
src/qdk_chemistry/definitions.py                                                                     8      0   100%
src/qdk_chemistry/plugins/__init__.py                                                                0      0   100%
src/qdk_chemistry/plugins/pyscf/__init__.py                                                         18      0   100%
src/qdk_chemistry/plugins/pyscf/active_space_avas.py                                                77      7    91%
src/qdk_chemistry/plugins/pyscf/conversion.py                                                      264     16    94%
src/qdk_chemistry/plugins/pyscf/coupled_cluster.py                                                 101     27    73%
src/qdk_chemistry/plugins/pyscf/localization.py                                                     72      8    89%
src/qdk_chemistry/plugins/pyscf/mcscf.py                                                           123     15    88%
src/qdk_chemistry/plugins/pyscf/scf_solver.py                                                      102      5    95%
src/qdk_chemistry/plugins/pyscf/stability.py                                                       154      2    99%
src/qdk_chemistry/plugins/qiskit/__init__.py                                                        45      1    98%
src/qdk_chemistry/plugins/qiskit/_interop/__init__.py                                                0      0   100%
src/qdk_chemistry/plugins/qiskit/_interop/circuit.py                                               130      0   100%
src/qdk_chemistry/plugins/qiskit/_interop/noise_model.py                                            15      1    93%
src/qdk_chemistry/plugins/qiskit/_interop/transpiler.py                                            139      6    96%
src/qdk_chemistry/plugins/qiskit/circuit_executor.py                                                38      0   100%
src/qdk_chemistry/plugins/qiskit/conversion.py                                                      31      0   100%
src/qdk_chemistry/plugins/qiskit/energy_estimator.py                                                69      1    99%
src/qdk_chemistry/plugins/qiskit/qubit_mapper.py                                                    35      1    97%
src/qdk_chemistry/plugins/qiskit/regular_isometry.py                                                40      0   100%
src/qdk_chemistry/plugins/qiskit/standard_phase_estimation.py                                       69      4    94%
src/qdk_chemistry/utils/__init__.py                                                                  3      0   100%
src/qdk_chemistry/utils/cubegen.py                                                                  54     54     0%
src/qdk_chemistry/utils/enum.py                                                                     23     10    57%
src/qdk_chemistry/utils/phase.py                                                                    39      1    97%
src/qdk_chemistry/utils/telemetry.py                                                               136     85    38%
src/qdk_chemistry/utils/telemetry_events.py                                                         59     48    19%
src/qdk_chemistry/utils/wavefunction.py                                                             57     57     0%
--------------------------------------------------------------------------------------------------------------------
TOTAL                                                                                             4547    629    86%
Coverage HTML written to dir ../coverage-reports/python_coverage_html
Coverage XML written to file ../coverage-reports/python_coverage.xml
=========================== short test summary info ============================
SKIPPED [1] tests/test_sample_workflow.py:219: Skipping slow test. Set QDK_CHEMISTRY_RUN_SLOW_TESTS=1 to enable.
SKIPPED [1] tests/test_sample_workflow.py:236: Skipping slow test. Set QDK_CHEMISTRY_RUN_SLOW_TESTS=1 to enable.
SKIPPED [1] tests/test_sample_workflow_openfermion.py:35: OpenFermion not available
SKIPPED [1] tests/test_sample_workflow_rdkit.py:30: Skipping: RDKit not installed
=========== 1142 passed, 4 skipped, 1 warning in 1211.45s (0:20:11) ============
Pybind11 Coverage Details
------------------------------------------------------------------------------
                           GCC Code Coverage Report
Directory: .
------------------------------------------------------------------------------
File                                       Lines     Exec  Cover   Missing
------------------------------------------------------------------------------
src/pybind11/algorithms/active_space.cpp      37       37   100%
src/pybind11/algorithms/davidson_solver.cpp
                                              35       34    97%   28
src/pybind11/algorithms/dynamical_correlation_calculator.cpp
                                              30       30   100%
src/pybind11/algorithms/factory_bindings.hpp
                                             198      189    95%   218,218,218,218,218,218,218,218,218
src/pybind11/algorithms/hamiltonian.cpp       35       35   100%
src/pybind11/algorithms/localizer.cpp         37       37   100%
src/pybind11/algorithms/mc.cpp                36       36   100%
src/pybind11/algorithms/mcscf.cpp             33       33   100%
src/pybind11/algorithms/pmc.cpp               35       34    97%   178
src/pybind11/algorithms/scf.cpp               34       34   100%
src/pybind11/algorithms/stability.cpp         33       33   100%
src/pybind11/algorithms/syev_solver.cpp       19       18    94%   43
src/pybind11/constants.cpp                    89       89   100%
src/pybind11/data/ansatz.cpp                  69       69   100%
src/pybind11/data/basis_set.cpp              204      204   100%
src/pybind11/data/configuration.cpp           30       29    96%   200
src/pybind11/data/configuration_set.cpp       84       84   100%
src/pybind11/data/data_class.cpp             107       26    24%   19-20,23-24,27,29,32,34-37,39-44,46,48-49,52,54,57-59,64,67,71-72,75,78-79,81-82,90,92,94-96,98,101,104-105,107,110,113-115,117-120,124,126,128-129,131,133,135-137,139,141,143-145,150-151,153,156-157,159,162-163,165,168-169,171,174,176,178
src/pybind11/data/element_data.cpp           123      123   100%
src/pybind11/data/hamiltonian.cpp            186      179    96%   61,64,66,407,426,599,619
src/pybind11/data/orbitals.cpp               138      137    99%   940
src/pybind11/data/path_utils.hpp              19       11    57%   37,39,42-47
src/pybind11/data/pauli_operator.cpp         274      253    92%   146,257,322,398,403,409,415,427,467,473,505,511,517,529,604,636,641,655,659,667,687
src/pybind11/data/property_binding_helpers.hpp
                                             288      288   100%
src/pybind11/data/serialization.cpp            5        5   100%
src/pybind11/data/settings.cpp               718      482    67%   40-41,57-58,108-109,115-116,121-122,127,129,134,136,162-166,175-177,180-183,188-192,196-198,208-211,215-219,228-231,235-240,244-247,257-260,264-268,271-275,279-289,291-309,311-325,327-329,333,336-338,372-378,391,441,443-444,480,551,1211,1219,1225,1228,1345,1379,1457,1520,1545,1570,1596,1660,1748-1749,1751-1755,1789-1793,1795-1800,1851,1905,1931-1932,1934,1937-1940,1966,2008-2009,2011-2012,2043-2044,2046,2049-2052,2079-2081,2102-2104,2106-2107,2126-2132,2152-2154,2156-2157,2179-2183,2185-2190,2221-2222,2240-2246,2268-2269,2287-2293
src/pybind11/data/stability_result.cpp       112      112   100%
src/pybind11/data/structure.cpp              199      184    92%   69,72,75-78,82-84,87,90-91,969,977,999
src/pybind11/data/wavefunction.cpp           299      287    96%   38,177-178,181,185,191,386-390,392
src/pybind11/module.cpp                       41       41   100%
src/pybind11/qdk_scf_config.cpp               12       12   100%
src/pybind11/utils/logger.cpp                191      177    92%   27,54,68-69,92,97-99,105-106,262-263,476,480
src/pybind11/utils/orbital_rotation.cpp        7        7   100%
src/pybind11/utils/valence_space.cpp           5        5   100%
------------------------------------------------------------------------------
TOTAL                                       3762     3354    89%
------------------------------------------------------------------------------

@nabbelbabbel nabbelbabbel added the enhancement New feature or request label Dec 17, 2025
@nabbelbabbel nabbelbabbel self-assigned this Dec 17, 2025
@nabbelbabbel nabbelbabbel changed the title Add CI coefficients foir CC/MP2 Add CI coefficients for CC/MP2 Dec 17, 2025
Co-authored-by: David Williams-Young <davidwillia@microsoft.com>
Copilot AI review requested due to automatic review settings January 5, 2026 16:56
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Copilot AI review requested due to automatic review settings January 8, 2026 16:19
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Copilot AI review requested due to automatic review settings January 8, 2026 18:17
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Copilot reviewed 29 out of 29 changed files in this pull request and generated 2 comments.

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python/src/pybind11/data/wavefunction.cpp:1077

  • The removed Python binding constructor appears to accept RDMs as optional parameters. However, based on the changes to the C++ code, RDMs are no longer stored in CoupledClusterContainer constructors - they should be computed lazily or require the adjoint wavefunction. This removal is correct given the new architecture, but verify that no existing code depends on this constructor signature.

      .def("get_wavefunction", &CoupledClusterContainer::get_wavefunction,
           R"(
Get reference to Wavefunction.

Returns:
    Wavefunction: Shared pointer to Wavefunction

Examples:
    >>> wfn = cc_container.get_wavefunction()
        )",
           py::return_value_policy::reference_internal)

      .def(
          "get_t1_amplitudes",
          [](const CoupledClusterContainer& self) {
            const auto& [t1_aa, t1_bb] = self.get_t1_amplitudes();
            return py::make_tuple(variant_to_python(t1_aa),
                                  variant_to_python(t1_bb));
          },
          R"(
Get T1 amplitudes. In restricted CC, both T1 amplitudes will be identical.

Returns:
    tuple: Pair of (alpha, beta) T1 amplitudes

Examples:
    >>> t1_aa, t1_bb = cc_container.get_t1_amplitudes()
        )")

      .def(
          "get_t2_amplitudes",
          [](const CoupledClusterContainer& self) {
            const auto& [t2_abab, t2_aaaa, t2_bbbb] = self.get_t2_amplitudes();
            return py::make_tuple(variant_to_python(t2_abab),
                                  variant_to_python(t2_aaaa),
                                  variant_to_python(t2_bbbb));
          },
          R"(
Get T2 amplitudes. In restricted CC, only the alpha-beta T2 amplitudes will be used.

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Copilot AI review requested due to automatic review settings January 9, 2026 13:34
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Copilot AI review requested due to automatic review settings January 9, 2026 15:49
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Copilot AI review requested due to automatic review settings January 13, 2026 13:37
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Jan Unsleber and others added 2 commits January 13, 2026 18:19
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
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@wavefunction91 wavefunction91 added this to the Release 2 milestone Jan 15, 2026
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