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Short RStudios code showcasing how Fourrier transformations are used in finding three base periodicity in Escherichia Coli.

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milagjurovska/Fourrier-Transfromations-in-Genomics

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Fourrier Transformations in Genomics

This project was made for the subject Engineering Mathematics, where the main uses for the Fourrier Transformations in Genomics is discussed.

Analysis of the coding regions in Escherichia coli using RStudios

A short code in R testing whether the DNA sequence in Escherichia coli, with the sample taken from NCBI (National Center for Biotechnology Information), is a coding region, by using the three-base periodicity property.

image The image above shows the result of the code, where the red line is the frequency at 1/3, and there is a peak right at the line, so this tells us that there might be a coding region in this section of the DNA sequence of Escherichia coli.

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Short RStudios code showcasing how Fourrier transformations are used in finding three base periodicity in Escherichia Coli.

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