chore: migrate DoubleMatrix to cheminto-types

src/matrix/matrixAbsoluteMedian.ts

@@ -1,9 +1,10 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
+
 import { xMedian } from '../x/index.ts';
 
 /**
  * Returns the median of the absolute matrix.
  * @param matrix
  */
 export function matrixAbsoluteMedian(matrix: DoubleMatrix): number {
   const nbColumns = matrix[0].length;

src/matrix/matrixAutoCorrelation.ts

@@ -1,7 +1,8 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
+
 import { xCorrelation } from '../x/index.ts';
 
 export function matrixAutoCorrelation(
   matrix: DoubleMatrix,
   index = 0,
 ): Float64Array<ArrayBuffer> {

src/matrix/matrixBoxPlot.ts

@@ -1,6 +1,4 @@
-import type { DoubleArray } from 'cheminfo-types';
-
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleArray, DoubleMatrix } from 'cheminfo-types';
 
 export interface MatrixBoxPlot {
   q1: Float64Array;
@@ -10,7 +8,7 @@
   max: Float64Array;
 }
 
 export function matrixBoxPlot(matrix: DoubleMatrix): MatrixBoxPlot {
   const nbRows = matrix.length;
   const nbColumns = matrix[0].length;
   if (nbRows < 5) {

src/matrix/matrixCenterZMean.ts

@@ -1,8 +1,8 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
 
 import { matrixCreateEmpty } from './matrixCreateEmpty.ts';
 
 /**
  * Center mean of matrix columns.
  * @param matrix - matrix [rows][cols]
  */

src/matrix/matrixCheck.ts

@@ -1,6 +1,6 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
 
 export function matrixCheck(data: DoubleMatrix): void {
   if (data.length === 0 || data[0].length === 0) {
     throw new RangeError('matrix must contain data');
   }

src/matrix/matrixCheckRanges.ts

@@ -1,4 +1,4 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
 
 export interface SubmatrixBoundaries {
   /**

src/matrix/matrixColumnsCorrelation.ts

@@ -1,9 +1,9 @@
+import type { DoubleMatrix } from 'cheminfo-types';
 import { Matrix } from 'ml-matrix';
 
-import type { DoubleMatrix } from '../types/index.ts';
 import { xCorrelation } from '../x/index.ts';
 
 /**
  * Calculates a correlation matrix based on the columns of the initial matrix.
  * @param A - matrix [rows][cols]
  */

src/matrix/matrixCreateEmpty.ts

@@ -1,4 +1,5 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
+
 import type {
   NumberArrayConstructor,
   NumberArrayType,
@@ -32,7 +33,7 @@
   ArrayConstructor?: ArrayConstructorType;
 }
 
 /**
  * Create a new matrix based on the size of the current one or by using specific dimensions.
  * @param options
  */

src/matrix/matrixHistogram.ts

@@ -1,6 +1,5 @@
-import type { DataXY } from 'cheminfo-types';
+import type { DataXY, DoubleMatrix } from 'cheminfo-types';
 
-import type { DoubleMatrix } from '../types/index.js';
 import type { XHistogramOptions } from '../x/index.ts';
 import { xHistogram } from '../x/index.ts';
 

src/matrix/matrixMedian.ts

@@ -1,4 +1,5 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
+
 import { xMedian } from '../x/index.ts';
 
 import { matrixToArray } from './matrixToArray.ts';

src/matrix/matrixMinMaxAbsoluteZ.ts

@@ -1,5 +1,4 @@
-import type { DoubleMatrix } from '../types/index.ts';
-
+import type { DoubleMatrix } from 'cheminfo-types';
 /**
  * Get min and max of the absolute values of Z.
  * @param matrix - matrix [rows][cols].

src/matrix/matrixMinMaxZ.ts

@@ -1,4 +1,4 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
 
 import { matrixCheck } from './matrixCheck.ts';
 

src/matrix/matrixNoiseStandardDeviation.ts

@@ -1,4 +1,5 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
+
 import { xNoiseStandardDeviation } from '../x/index.ts';
 
 import { matrixToArray } from './matrixToArray.ts';

src/matrix/matrixPQN.ts

@@ -1,6 +1,6 @@
+import type { DoubleMatrix } from 'cheminfo-types';
 import { Matrix } from 'ml-matrix';
 
-import type { DoubleMatrix } from '../types/index.ts';
 import { xMedian } from '../x/index.ts';
 
 export interface MatrixPQNOptions {

src/matrix/matrixSetSubMatrix.ts

@@ -1,4 +1,4 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
 
 import { matrixCheckRanges } from './matrixCheckRanges.ts';
 

src/matrix/matrixToArray.ts

@@ -1,4 +1,4 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
 
 import { matrixCheck } from './matrixCheck.ts';
 

src/matrix/matrixZRescale.ts

@@ -1,4 +1,5 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
+
 import type {
   DoubleArrayConstructor,
   DoubleArrayType,

src/matrix/matrixZRescalePerColumn.ts

@@ -1,4 +1,4 @@
-import type { DoubleMatrix } from '../types/index.ts';
+import type { DoubleMatrix } from 'cheminfo-types';
 
 import { matrixCreateEmpty } from './matrixCreateEmpty.ts';
 

src/types/index.ts

@@ -1,4 +1,3 @@
 export * from './DataReIm.ts';
 export * from './DataXReIm.ts';
-export * from './DoubleMatrix.ts';
 export * from './Point.ts';