feat: Implement Lightcycler XML parsing with validation for unique sa… #56
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added 2 commits
August 8, 2025 12:43
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Pull Request Overview
This PR implements XML parsing functionality for Lightcycler sample sheets with validation for unique sample coordinates. The implementation includes comprehensive error handling for missing properties, invalid data types, and duplicate coordinates.
- Added
LightcyclerXmlParserclass to parse XML files containing sample data - Created validation logic for required properties, data consistency, and coordinate uniqueness
- Implemented comprehensive error handling with custom exception classes
Reviewed Changes
Copilot reviewed 8 out of 8 changed files in this pull request and generated 4 comments.
Show a summary per file
| File | Description |
|---|---|
tests/LightcyclerExportSheet/QpcrXmlParserTest.php |
Comprehensive test suite covering XML parsing, validation, error handling, and edge cases |
src/LightcyclerExportSheet/LightcyclerXmlParser.php |
Main XML parser class with sample extraction and validation logic |
src/LightcyclerExportSheet/LightcyclerSample.php |
Data class representing a Lightcycler sample with coordinates and measurements |
src/LightcyclerExportSheet/LightcyclerDataParsingTrait.php |
Shared parsing utilities for data validation, cleaning, and coordinate uniqueness checks |
src/LightcyclerExportSheet/MissingRequiredPropertyException.php |
Custom exception for missing required XML properties |
src/LightcyclerExportSheet/DuplicateCoordinatesException.php |
Custom exception for duplicate sample coordinates |
composer.json |
Added ext-simplexml dependency for XML parsing |
CHANGELOG.md |
Updated changelog entry for the new feature |
spawnia
reviewed
Aug 11, 2025
src/LightcyclerExportSheet/MissingRequiredPropertyException.php
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Co-authored-by: Benedikt Franke <[email protected]>
spawnia
approved these changes
Aug 11, 2025
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…mple coordinates
Changes
Support parsing Lightcycler Sample Sheets from XML-file #56