fix: improve tool() parameter parsing to handle undefined values

[grimmerk]

Rewrites parameter parsing to find callback first, then parse args sequentially by type. Handles edge cases where optional params (description, paramsSchema, annotations) may be undefined.

Fixes cases like:

• tool(name, undefined, schema, undefined, callback)
• tool(name, description, undefined, annotations, callback)
• tool(name, undefined, schema, callback)

Motivation and Context

When tool() is called with undefined in optional parameter positions, the original shift-based parsing logic fails because:

• typeof undefined !== "object" causes undefined values to be skipped incorrectly
• Sequential shift() operations lose track of parameter positions

This happens in real-world scenarios when:

• Parameters come from optional config objects (config.annotations may be undefined)
• TypeScript strict mode is disabled in consuming projects
• Dynamic tool registration uses conditional parameters

The fix improves runtime robustness without changing the public API, maintaining backward compatibility while handling edge cases more gracefully.

How Has This Been Tested?

• ✅ All 79 unit tests pass (77 existing + 2 new)
• ✅ Added test: tool(name, undefined, schema, callback) - description undefined
• ✅ Added test: tool(name, desc, undefined, annotations, callback) - paramsSchema undefined
• ✅ Added test: tool(name, desc, schema, undefined, callback) - annotations undefined
• ✅ Each test verifies both tool registration and callback execution work correctly
• ✅ Build passes for both ESM and CJS outputs

Breaking Changes

None. This is a non-breaking internal fix:

• Public API signatures unchanged
• Existing valid usage patterns continue to work
• Only improves handling of edge cases that previously failed

Types of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to change)
• Documentation update

Checklist

• I have read the MCP Documentation
• My code follows the repository's style guidelines
• New and existing tests pass locally
• I have added appropriate error handling
• I have added or updated documentation as needed

Additional context

Implementation approach:

1. Find callback first (search backwards for last function in args)
2. Extract all parameters before callback
3. Parse sequentially with explicit undefined handling:
   • Check if arg matches expected type → assign & advance
   • Check if arg is undefined → skip & advance
   • Otherwise → don't advance (might be next param type)

This callback-first approach is more robust than the original shift-based logic because it establishes a fixed reference point (the callback) before parsing optional parameters.

Error handling:
Added validation to throw clear error if no callback function is found in arguments.

[grimmerk]

@dsp-ant, if you think this PR is worthwhile, I can try to resolve the conflict.

[ihrpr]

Thank you for working in this! We are moving towards the registerTool methods in this SDK, and tool will be deprecated soon (and thank you, you reminded we need to add deprecation notice! )

[grimmerk]

@ihrpr Thanks for the kind introduction to the API change. I’ve resolved the conflict.
I think this PR might still be worthwhile since the deprecated tool method could remain in use for a while.