Establish pipeline

[radistoubalidis]

Add dvc pipeline to Colombia Case

Description

The goal of this PR is :

• create a dvc pipeline containing the stages as described in Standalone_GCBM\readme.txt
• establish an action that when someone pushes a new run from a new branch is uses dvc to publish differences between the post-processing plots or other parameters.

Similar to GCBM.Belize

Type of change

• New feature (non-breaking change which adds functionality)
• This change requires a documentation update

Additional Context (Please include any Screenshots/gifs if relevant)

Follow the dvc installation and pipeline execution guide in pipeline.md to run the pipeline locally.

output of dvc stage list

tiler                       Outputs ..\..\logs\tiler_log.txt
recliner2gcbm_x64           Outputs logs\recliner_log.txt
add_species_vol_to_bio      Outputs logs\add_species_vol_to_bio.log
modify_root_parameters      Outputs logs\modify_root_parameters.log
modify_decay_parameters     Outputs logs\modify_decay_parameters.log
modify_turnover_parameters  Outputs logs\modify_turnover_parameters.log
modify_spinup_parameters    Outputs logs\modify_spinup_parameters.log
update_gcbm_configuration   Outputs ..\logs\update_gcbm_config.log
run_gcbm                    Outputs ..\logs\Moja_Debug.log
create_tiffs                Outputs ..\..\logs\create_tiffs.log, ..\..\processed_output\spatial
compile_results             Outputs ..\..\logs\compile_results.log
postprocessing              Reports metrics, Figures/Colombia_Sensitivity_TropicalDry.png, Figures/Colombia

[radistoubalidis]

Pipeline's flowchart

flowchart TD
        node1[add_species_vol_to_bio]
        node2[compile_results]
        node3[create_tiffs]
        node4[modify_decay_parameters]
        node5[modify_root_parameters]
        node6[modify_spinup_parameters]
        node7[modify_turnover_parameters]
        node8[postprocessing]
        node9[recliner2gcbm_x64]
        node10[run_gcbm]
        node11[tiler]
        node12[update_gcbm_configuration]
        node1-->node5
        node2-->node8
        node3-->node2
        node4-->node7
        node5-->node4
        node6-->node12
        node7-->node6
        node9-->node1
        node10-->node3
        node11-->node9
        node12-->node10

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