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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 291 64

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 62 5

  3. MAxO MAxO Public

    Medical action ontology

    HTML 63 5

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 21 5

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 34 7

Repositories

Showing 10 of 281 repositories
  • dismech Public

    Disease Mechanisms KB

    monarch-initiative/dismech’s past year of commit activity
    HTML 11 BSD-3-Clause 2 51 (1 issue needs help) 38 Updated Feb 27, 2026
  • kozahub Public

    Dashboard monitoring KozaHub ingest repository health

    monarch-initiative/kozahub’s past year of commit activity
    Python 0 0 0 0 Updated Feb 27, 2026
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 291 CC-BY-4.0 64 405 (2 issues need help) 54 Updated Feb 27, 2026
  • semsimian-server Public

    Rust web server for Semsimian - a semantic similarity implementation

    monarch-initiative/semsimian-server’s past year of commit activity
    Rust 0 BSD-3-Clause 1 1 2 Updated Feb 27, 2026
  • ncbi-gene Public
    monarch-initiative/ncbi-gene’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 3 Updated Feb 27, 2026
  • pheval Public

    A framework for empirical evaluation of phenotype matching and prioritisation

    monarch-initiative/pheval’s past year of commit activity
    Python 17 Apache-2.0 5 24 4 Updated Feb 26, 2026
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 8 4 72 6 Updated Feb 25, 2026
  • zfin-genotype-to-phenotype-ingest Public
    monarch-initiative/zfin-genotype-to-phenotype-ingest’s past year of commit activity
    Python 0 MIT 0 0 3 Updated Feb 25, 2026
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 7 4 254 (1 issue needs help) 6 Updated Feb 24, 2026
  • monarchr Public

    R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.

    monarch-initiative/monarchr’s past year of commit activity
    R 17 3 7 (1 issue needs help) 0 Updated Feb 24, 2026
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