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Merge pull request #341 from monarch-initiative/generate-pages-20260214-024711
📄 Regenerate pages and dashboard (2026-02-14)
2 parents ce495bd + 07c11a6 commit cecece3

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‎app/data.js‎

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‎dashboard/index.html‎

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Original file line numberDiff line numberDiff line change
@@ -110,25 +110,25 @@
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<div class="container">
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<header>
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<h1>QC Dashboard - Multi-File Comparison</h1>
113-
<p class="subtitle">378 files analyzed (sorted by compliance, lowest first)</p>
113+
<p class="subtitle">385 files analyzed (sorted by compliance, lowest first)</p>
114114
</header>
115115

116116
<section class="summary-cards">
117117
<div class="card">
118118
<h3>Files Analyzed</h3>
119-
<div class="value">378</div>
119+
<div class="value">385</div>
120120
</div>
121121
<div class="card">
122122
<h3>Average Compliance</h3>
123-
<div class="value bad">70.7%</div>
123+
<div class="value bad">71.2%</div>
124124
</div>
125125
<div class="card">
126126
<h3>Total Checks</h3>
127-
<div class="value">13319/18847</div>
127+
<div class="value">13947/19579</div>
128128
</div>
129129
<div class="card">
130130
<h3>Total Violations</h3>
131-
<div class="value bad">211</div>
131+
<div class="value bad">215</div>
132132
</div>
133133
</section>
134134

@@ -1433,6 +1433,12 @@ <h2>All Files (Sorted by Priority)</h2>
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<td>82.0%</td>
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<td>54/71</td>
14351435
<td>1</td>
1436+
</tr><tr class="">
1437+
<td><code>Arsenic_Poisoning.yaml</code></td>
1438+
<td class="bad">76.3%</td>
1439+
<td>80.6%</td>
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<td>132/173</td>
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<td>1</td>
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</tr><tr class="">
14371443
<td><code>Dieulafoy_Lesion.yaml</code></td>
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<td class="bad">76.7%</td>
@@ -1619,6 +1625,12 @@ <h2>All Files (Sorted by Priority)</h2>
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<td>89.3%</td>
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<td>23/28</td>
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<td></td>
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</tr><tr class="">
1629+
<td><code>Morgagni-Stewart-Morel_Syndrome.yaml</code></td>
1630+
<td class="warning">82.3%</td>
1631+
<td>87.2%</td>
1632+
<td>65/79</td>
1633+
<td></td>
16221634
</tr><tr class="">
16231635
<td><code>Loeys-Dietz_Syndrome.yaml</code></td>
16241636
<td class="warning">82.4%</td>
@@ -1835,6 +1847,12 @@ <h2>All Files (Sorted by Priority)</h2>
18351847
<td>91.7%</td>
18361848
<td>55/63</td>
18371849
<td></td>
1850+
</tr><tr class="">
1851+
<td><code>Empty_Nose_Syndrome.yaml</code></td>
1852+
<td class="warning">87.4%</td>
1853+
<td>89.5%</td>
1854+
<td>83/95</td>
1855+
<td>1</td>
18381856
</tr><tr class="">
18391857
<td><code>Botulism.yaml</code></td>
18401858
<td class="warning">87.5%</td>
@@ -1901,12 +1919,24 @@ <h2>All Files (Sorted by Priority)</h2>
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<td>92.7%</td>
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<td>49/55</td>
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<td></td>
1922+
</tr><tr class="">
1923+
<td><code>Cadmium_Poisoning.yaml</code></td>
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<td class="warning">89.1%</td>
1925+
<td>91.2%</td>
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<td>139/156</td>
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<td>1</td>
19041928
</tr><tr class="">
19051929
<td><code>Lipoic_Acid_Synthetase_Deficiency.yaml</code></td>
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<td class="warning">89.5%</td>
19071931
<td>94.2%</td>
19081932
<td>34/38</td>
19091933
<td></td>
1934+
</tr><tr class="">
1935+
<td><code>CADASIL_Type_1.yaml</code></td>
1936+
<td class="warning">89.6%</td>
1937+
<td>94.0%</td>
1938+
<td>43/48</td>
1939+
<td></td>
19101940
</tr><tr class="">
19111941
<td><code>Orofaciodigital_Syndrome_Type_I.yaml</code></td>
19121942
<td class="warning">89.7%</td>
@@ -2015,6 +2045,12 @@ <h2>All Files (Sorted by Priority)</h2>
20152045
<td>92.0%</td>
20162046
<td>21/23</td>
20172047
<td>1</td>
2048+
</tr><tr class="">
2049+
<td><code>CINCA_Syndrome.yaml</code></td>
2050+
<td class="warning">91.6%</td>
2051+
<td>93.2%</td>
2052+
<td>120/131</td>
2053+
<td>1</td>
20182054
</tr><tr class="">
20192055
<td><code>Chagas_Disease.yaml</code></td>
20202056
<td class="warning">91.7%</td>
@@ -2045,6 +2081,12 @@ <h2>All Files (Sorted by Priority)</h2>
20452081
<td>94.4%</td>
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<td>34/37</td>
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<td>1</td>
2084+
</tr><tr class="">
2085+
<td><code>Central_Core_Myopathy.yaml</code></td>
2086+
<td class="warning">92.0%</td>
2087+
<td>95.6%</td>
2088+
<td>46/50</td>
2089+
<td></td>
20482090
</tr><tr class="">
20492091
<td><code>Lung_Carcinoma.yaml</code></td>
20502092
<td class="warning">92.0%</td>
@@ -2465,7 +2507,7 @@ <h2>All Files (Sorted by Priority)</h2>
24652507
</section>
24662508

24672509
<footer>
2468-
<p>Generated by <a href="https://github.com/linkml/linkml-data-qc">linkml-data-qc</a> on 2026-02-13 04:01</p>
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<p>Generated by <a href="https://github.com/linkml/linkml-data-qc">linkml-data-qc</a> on 2026-02-14 02:47</p>
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</footer>
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</div>
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</body>

‎dashboard/reports.json‎

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@@ -1655,6 +1655,14 @@
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"total_populated": 54,
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"violations": 1
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},
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{
1659+
"file": "Arsenic_Poisoning.yaml",
1660+
"global_compliance": 76.30057803468208,
1661+
"weighted_compliance": 80.61068702290076,
1662+
"total_checks": 173,
1663+
"total_populated": 132,
1664+
"violations": 1
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},
16581666
{
16591667
"file": "Dieulafoy_Lesion.yaml",
16601668
"global_compliance": 76.66666666666667,
@@ -1903,6 +1911,14 @@
19031911
"total_populated": 23,
19041912
"violations": 0
19051913
},
1914+
{
1915+
"file": "Morgagni-Stewart-Morel_Syndrome.yaml",
1916+
"global_compliance": 82.27848101265823,
1917+
"weighted_compliance": 87.21311475409837,
1918+
"total_checks": 79,
1919+
"total_populated": 65,
1920+
"violations": 0
1921+
},
19061922
{
19071923
"file": "Loeys-Dietz_Syndrome.yaml",
19081924
"global_compliance": 82.35294117647058,
@@ -2191,6 +2207,14 @@
21912207
"total_populated": 55,
21922208
"violations": 0
21932209
},
2210+
{
2211+
"file": "Empty_Nose_Syndrome.yaml",
2212+
"global_compliance": 87.36842105263159,
2213+
"weighted_compliance": 89.45945945945945,
2214+
"total_checks": 95,
2215+
"total_populated": 83,
2216+
"violations": 1
2217+
},
21942218
{
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"file": "Botulism.yaml",
21962220
"global_compliance": 87.5,
@@ -2279,6 +2303,14 @@
22792303
"total_populated": 49,
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"violations": 0
22812305
},
2306+
{
2307+
"file": "Cadmium_Poisoning.yaml",
2308+
"global_compliance": 89.1025641025641,
2309+
"weighted_compliance": 91.2310286677909,
2310+
"total_checks": 156,
2311+
"total_populated": 139,
2312+
"violations": 1
2313+
},
22822314
{
22832315
"file": "Lipoic_Acid_Synthetase_Deficiency.yaml",
22842316
"global_compliance": 89.47368421052632,
@@ -2287,6 +2319,14 @@
22872319
"total_populated": 34,
22882320
"violations": 0
22892321
},
2322+
{
2323+
"file": "CADASIL_Type_1.yaml",
2324+
"global_compliance": 89.58333333333334,
2325+
"weighted_compliance": 94.02985074626866,
2326+
"total_checks": 48,
2327+
"total_populated": 43,
2328+
"violations": 0
2329+
},
22902330
{
22912331
"file": "Orofaciodigital_Syndrome_Type_I.yaml",
22922332
"global_compliance": 89.65517241379311,
@@ -2431,6 +2471,14 @@
24312471
"total_populated": 21,
24322472
"violations": 1
24332473
},
2474+
{
2475+
"file": "CINCA_Syndrome.yaml",
2476+
"global_compliance": 91.6030534351145,
2477+
"weighted_compliance": 93.17269076305222,
2478+
"total_checks": 131,
2479+
"total_populated": 120,
2480+
"violations": 1
2481+
},
24342482
{
24352483
"file": "Chagas_Disease.yaml",
24362484
"global_compliance": 91.66666666666666,
@@ -2471,6 +2519,14 @@
24712519
"total_populated": 34,
24722520
"violations": 1
24732521
},
2522+
{
2523+
"file": "Central_Core_Myopathy.yaml",
2524+
"global_compliance": 92.0,
2525+
"weighted_compliance": 95.58823529411765,
2526+
"total_checks": 50,
2527+
"total_populated": 46,
2528+
"violations": 0
2529+
},
24742530
{
24752531
"file": "Lung_Carcinoma.yaml",
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"global_compliance": 92.0,

‎pages/disorders/22q11.2_Deletion_Syndrome.html‎

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@@ -1274,7 +1274,7 @@ <h1>22q11.2 Deletion Syndrome</h1>
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<a class="stat-link" href="#pathophysiology">
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<div class="stat-item">
12761276
<div class="stat-value">4</div>
1277-
<div class="stat-label">Mechanisms</div>
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<div class="stat-label">Pathophysiology</div>
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</div>
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</a>
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@@ -1754,23 +1754,23 @@ <h2 class="card-title">Causal Graph</h2>
17541754

17551755
<div class="mermaid-container">
17561756
<pre class="mermaid">graph LR
1757-
Thymic_hypoplasia_and_T_cell_immunodeficiency[&#34;Thymic hypoplasia and T-cell immunodeficiency&#34;]
1758-
Conotruncal_heart_defects[&#34;Conotruncal heart defects&#34;]
1759-
Hypocalcemia[&#34;Hypocalcemia&#34;]
1760-
T_cell_immunodeficiency[&#34;T-cell immunodeficiency&#34;]
17611757
Cardiac_neural_crest_migration_defect[&#34;Cardiac neural crest migration defect&#34;]
17621758
Parathyroid_hypoplasia_and_hypocalcemia[&#34;Parathyroid hypoplasia and hypocalcemia&#34;]
1759+
Hypocalcemia[&#34;Hypocalcemia&#34;]
1760+
T_cell_immunodeficiency[&#34;T-cell immunodeficiency&#34;]
1761+
Thymic_hypoplasia_and_T_cell_immunodeficiency[&#34;Thymic hypoplasia and T-cell immunodeficiency&#34;]
1762+
Conotruncal_heart_defects[&#34;Conotruncal heart defects&#34;]
17631763

17641764
Cardiac_neural_crest_migration_defect -.-&gt; Conotruncal_heart_defects
17651765
Thymic_hypoplasia_and_T_cell_immunodeficiency --&gt; T_cell_immunodeficiency
17661766
Parathyroid_hypoplasia_and_hypocalcemia --&gt; Hypocalcemia
17671767

1768-
style Thymic_hypoplasia_and_T_cell_immunodeficiency fill:#dbeafe
1769-
style Conotruncal_heart_defects fill:#fee2e2,stroke:#dc2626,stroke-dasharray: 5 5
1768+
style Cardiac_neural_crest_migration_defect fill:#dbeafe
1769+
style Parathyroid_hypoplasia_and_hypocalcemia fill:#dbeafe
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style Hypocalcemia fill:#fef3c7
17711771
style T_cell_immunodeficiency fill:#fef3c7
1772-
style Cardiac_neural_crest_migration_defect fill:#dbeafe
1773-
style Parathyroid_hypoplasia_and_hypocalcemia fill:#dbeafe</pre>
1772+
style Thymic_hypoplasia_and_T_cell_immunodeficiency fill:#dbeafe
1773+
style Conotruncal_heart_defects fill:#fee2e2,stroke:#dc2626,stroke-dasharray: 5 5</pre>
17741774
</div>
17751775
</div>
17761776

‎pages/disorders/ALK-Rearranged_Non-Small_Cell_Lung_Cancer.html‎

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@@ -1267,7 +1267,7 @@ <h1>ALK-Rearranged Non-Small Cell Lung Cancer</h1>
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<a class="stat-link" href="#pathophysiology">
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<div class="stat-item">
12691269
<div class="stat-value">4</div>
1270-
<div class="stat-label">Mechanisms</div>
1270+
<div class="stat-label">Pathophysiology</div>
12711271
</div>
12721272
</a>
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@@ -1727,15 +1727,15 @@ <h2 class="card-title">Causal Graph</h2>
17271727
<div class="mermaid-container">
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<pre class="mermaid">graph LR
17291729
Oncogene_Addiction[&#34;Oncogene Addiction&#34;]
1730-
Constitutive_ALK_Signaling[&#34;Constitutive ALK Signaling&#34;]
17311730
ALK_Gene_Rearrangement[&#34;ALK Gene Rearrangement&#34;]
1731+
Constitutive_ALK_Signaling[&#34;Constitutive ALK Signaling&#34;]
17321732

17331733
ALK_Gene_Rearrangement --&gt; Constitutive_ALK_Signaling
17341734
Constitutive_ALK_Signaling --&gt; Oncogene_Addiction
17351735

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style Oncogene_Addiction fill:#dbeafe
1737-
style Constitutive_ALK_Signaling fill:#dbeafe
1738-
style ALK_Gene_Rearrangement fill:#dbeafe</pre>
1737+
style ALK_Gene_Rearrangement fill:#dbeafe
1738+
style Constitutive_ALK_Signaling fill:#dbeafe</pre>
17391739
</div>
17401740
</div>
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‎pages/disorders/ATTR_Amyloidosis.html‎

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@@ -1269,7 +1269,7 @@ <h1>ATTR_Amyloidosis</h1>
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<a class="stat-link" href="#pathophysiology">
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<div class="stat-item">
12711271
<div class="stat-value">5</div>
1272-
<div class="stat-label">Mechanisms</div>
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<div class="stat-label">Pathophysiology</div>
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</div>
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</a>
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@@ -2055,25 +2055,25 @@ <h2 class="card-title">Causal Graph</h2>
20552055

20562056
<div class="mermaid-container">
20572057
<pre class="mermaid">graph LR
2058-
Oxidative_Stress_and_Mitochondrial_Dysfunction[&#34;Oxidative Stress and Mitochondrial Dysfunction&#34;]
2059-
Renal_Dysfunction[&#34;Renal Dysfunction&#34;]
2060-
Amyloid_Fibril_Formation[&#34;Amyloid Fibril Formation&#34;]
2061-
Gastrointestinal_Symptoms[&#34;Gastrointestinal Symptoms&#34;]
2062-
Fatigue[&#34;Fatigue&#34;]
2063-
TTR_Tetramer_Destabilization[&#34;TTR Tetramer Destabilization&#34;]
20642058
Heart_Failure[&#34;Heart Failure&#34;]
2065-
Numbness_and_Tingling[&#34;Numbness and Tingling&#34;]
2059+
Peripheral_Neuropathy[&#34;Peripheral Neuropathy&#34;]
2060+
Cardiac_and_Neurological_Dysfunction[&#34;Cardiac and Neurological Dysfunction&#34;]
2061+
Sensory_Loss[&#34;Sensory Loss&#34;]
20662062
Vitreous_Opacities[&#34;Vitreous Opacities&#34;]
2063+
Gastrointestinal_Symptoms[&#34;Gastrointestinal Symptoms&#34;]
2064+
Renal_Dysfunction[&#34;Renal Dysfunction&#34;]
20672065
Cardiomyopathy[&#34;Cardiomyopathy&#34;]
2068-
Carpal_Tunnel_Syndrome[&#34;Carpal Tunnel Syndrome&#34;]
2069-
Autonomic_Dysfunction[&#34;Autonomic Dysfunction&#34;]
2066+
Oxidative_Stress_and_Mitochondrial_Dysfunction[&#34;Oxidative Stress and Mitochondrial Dysfunction&#34;]
20702067
Peripheral_Nerve_Degeneration[&#34;Peripheral Nerve Degeneration&#34;]
2071-
Arrhythmias[&#34;Arrhythmias&#34;]
2072-
Peripheral_Neuropathy[&#34;Peripheral Neuropathy&#34;]
2073-
Orthostatic_Hypotension[&#34;Orthostatic Hypotension&#34;]
2068+
Numbness_and_Tingling[&#34;Numbness and Tingling&#34;]
2069+
Carpal_Tunnel_Syndrome[&#34;Carpal Tunnel Syndrome&#34;]
20742070
Calcium_Homeostasis_Disruption[&#34;Calcium Homeostasis Disruption&#34;]
2075-
Cardiac_and_Neurological_Dysfunction[&#34;Cardiac and Neurological Dysfunction&#34;]
2076-
Sensory_Loss[&#34;Sensory Loss&#34;]
2071+
Orthostatic_Hypotension[&#34;Orthostatic Hypotension&#34;]
2072+
Arrhythmias[&#34;Arrhythmias&#34;]
2073+
Autonomic_Dysfunction[&#34;Autonomic Dysfunction&#34;]
2074+
Amyloid_Fibril_Formation[&#34;Amyloid Fibril Formation&#34;]
2075+
Fatigue[&#34;Fatigue&#34;]
2076+
TTR_Tetramer_Destabilization[&#34;TTR Tetramer Destabilization&#34;]
20772077

20782078
TTR_Tetramer_Destabilization --&gt; Amyloid_Fibril_Formation
20792079
Amyloid_Fibril_Formation -.-&gt; Cardiac_and_Neurological_Dysfunction
@@ -2103,25 +2103,25 @@ <h2 class="card-title">Causal Graph</h2>
21032103
Cardiomyopathy --&gt; Arrhythmias
21042104
Cardiomyopathy --&gt; Orthostatic_Hypotension
21052105

2106-
style Oxidative_Stress_and_Mitochondrial_Dysfunction fill:#dbeafe
2107-
style Renal_Dysfunction fill:#fef3c7
2108-
style Amyloid_Fibril_Formation fill:#dbeafe
2109-
style Gastrointestinal_Symptoms fill:#fef3c7
2110-
style Fatigue fill:#fef3c7
2111-
style TTR_Tetramer_Destabilization fill:#dbeafe
21122106
style Heart_Failure fill:#fef3c7
2113-
style Numbness_and_Tingling fill:#fef3c7
2107+
style Peripheral_Neuropathy fill:#fef3c7
2108+
style Cardiac_and_Neurological_Dysfunction fill:#fee2e2,stroke:#dc2626,stroke-dasharray: 5 5
2109+
style Sensory_Loss fill:#fef3c7
21142110
style Vitreous_Opacities fill:#fef3c7
2111+
style Gastrointestinal_Symptoms fill:#fef3c7
2112+
style Renal_Dysfunction fill:#fef3c7
21152113
style Cardiomyopathy fill:#fef3c7
2116-
style Carpal_Tunnel_Syndrome fill:#fef3c7
2117-
style Autonomic_Dysfunction fill:#fef3c7
2114+
style Oxidative_Stress_and_Mitochondrial_Dysfunction fill:#dbeafe
21182115
style Peripheral_Nerve_Degeneration fill:#dbeafe
2119-
style Arrhythmias fill:#fef3c7
2120-
style Peripheral_Neuropathy fill:#fef3c7
2121-
style Orthostatic_Hypotension fill:#fef3c7
2116+
style Numbness_and_Tingling fill:#fef3c7
2117+
style Carpal_Tunnel_Syndrome fill:#fef3c7
21222118
style Calcium_Homeostasis_Disruption fill:#dbeafe
2123-
style Cardiac_and_Neurological_Dysfunction fill:#fee2e2,stroke:#dc2626,stroke-dasharray: 5 5
2124-
style Sensory_Loss fill:#fef3c7</pre>
2119+
style Orthostatic_Hypotension fill:#fef3c7
2120+
style Arrhythmias fill:#fef3c7
2121+
style Autonomic_Dysfunction fill:#fef3c7
2122+
style Amyloid_Fibril_Formation fill:#dbeafe
2123+
style Fatigue fill:#fef3c7
2124+
style TTR_Tetramer_Destabilization fill:#dbeafe</pre>
21252125
</div>
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</div>
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