Merge pull request #979 from monarch-initiative/update-actions

Bump action versions

Author: amc-corey-cox

.github/workflows/build-and-deploy-images.yaml

@@ -28,7 +28,7 @@ jobs:
           echo "IMAGE_TAG=${IMAGE_TAG//v}" >> $GITHUB_OUTPUT
 
       - name: Build and Push Image
-        uses: RafikFarhad/push-to-gcr-github-action@v5-beta
+        uses: RafikFarhad/push-to-gcr-github-action@v5-rc1
         with:
           gcloud_service_key: ${{ secrets.JSON_GCLOUD_SERVICE_ACCOUNT_JSON }}
           registry: us-central1-docker.pkg.dev
@@ -51,7 +51,7 @@ jobs:
           fetch-depth: 0 # to get all tags
 
       - name: Set up Bun
-        uses: oven-sh/setup-bun@v1
+        uses: oven-sh/setup-bun@v2
 
       - name: Install packages
         run: bun install
@@ -72,7 +72,7 @@ jobs:
       # ./services/nginx/config/, copied to /etc/nginx/conf.d/ in the image
 
       - name: Build and Push Image
-        uses: RafikFarhad/push-to-gcr-github-action@v5-beta
+        uses: RafikFarhad/push-to-gcr-github-action@v5-rc1
         with:
           gcloud_service_key: ${{ secrets.JSON_GCLOUD_SERVICE_ACCOUNT_JSON }}
           registry: us-central1-docker.pkg.dev

.github/workflows/build-semsim-image.yaml

@@ -16,7 +16,7 @@ jobs:
           fetch-depth: 0 # to get all tags
 
       - name: Build and Push Image
-        uses: RafikFarhad/push-to-gcr-github-action@v5-beta
+        uses: RafikFarhad/push-to-gcr-github-action@v5-rc1
         with:
           gcloud_service_key: ${{ secrets.JSON_GCLOUD_SERVICE_ACCOUNT_JSON }} # not needed if you use google-github-actions/auth
           registry: us-central1-docker.pkg.dev

.github/workflows/codecov_main.yaml

@@ -16,7 +16,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
 
@@ -53,10 +53,10 @@ jobs:
       #----------------------------------------------
       - name: Upload coverage report
         if: github.repository == 'monarch-initiative/monarch-app'
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
         with:
           name: codecov-results-${{ matrix.python-version }}
           token: ${{ secrets.CODECOV_TOKEN }}
-          file: coverage.xml
+          files: coverage.xml
           fail_ci_if_error: true
 

.github/workflows/test-backend.yaml

@@ -62,10 +62,10 @@ jobs:
       #----------------------------------------------
       - name: Upload coverage report
         if: github.repository == 'monarch-initiative/monarch-app'
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
         with:
           name: codecov-results-${{ matrix.python-version }}
           token: ${{ secrets.CODECOV_TOKEN }}
-          file: coverage.xml
+          files: coverage.xml
           fail_ci_if_error: true
 

.github/workflows/test-frontend.yaml

@@ -15,7 +15,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Set up Bun
-        uses: oven-sh/setup-bun@v1
+        uses: oven-sh/setup-bun@v2
 
       - name: Install packages
         run: bun install
@@ -34,7 +34,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Set up Bun
-        uses: oven-sh/setup-bun@v1
+        uses: oven-sh/setup-bun@v2
 
       - name: Install packages
         run: bun install
@@ -53,7 +53,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Set up Bun
-        uses: oven-sh/setup-bun@v1
+        uses: oven-sh/setup-bun@v2
 
       - name: Install packages
         run: bun install
@@ -72,7 +72,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Set up Bun
-        uses: oven-sh/setup-bun@v1
+        uses: oven-sh/setup-bun@v2
 
       - name: Install packages
         run: bun install
@@ -88,7 +88,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Set up Bun
-        uses: oven-sh/setup-bun@v1
+        uses: oven-sh/setup-bun@v2
 
       - name: Install packages
         run: bun install