Skip to content

Commit 37320b3

Browse files
committed
RAB32
1 parent 0c83ed2 commit 37320b3

39 files changed

+12585
-0
lines changed

notebooks/RAB32/RAB32_PARK26_individuals.json

Lines changed: 6056 additions & 0 deletions
Large diffs are not rendered by default.
Lines changed: 182 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,182 @@
1+
{
2+
"id": "PMID_38614108_CAN1_III_2",
3+
"subject": {
4+
"id": "CAN1 III-2",
5+
"timeAtLastEncounter": {
6+
"age": {
7+
"iso8601duration": "P70Y"
8+
}
9+
},
10+
"sex": "MALE"
11+
},
12+
"phenotypicFeatures": [
13+
{
14+
"type": {
15+
"id": "HP:0002172",
16+
"label": "Postural instability"
17+
},
18+
"onset": {
19+
"age": {
20+
"iso8601duration": "P50Y"
21+
}
22+
}
23+
},
24+
{
25+
"type": {
26+
"id": "HP:0002304",
27+
"label": "Akinesia"
28+
}
29+
},
30+
{
31+
"type": {
32+
"id": "HP:0002548",
33+
"label": "Parkinsonism with favorable response to dopaminergic medication"
34+
}
35+
},
36+
{
37+
"type": {
38+
"id": "HP:0002312",
39+
"label": "Clumsiness"
40+
},
41+
"onset": {
42+
"age": {
43+
"iso8601duration": "P50Y"
44+
}
45+
}
46+
},
47+
{
48+
"type": {
49+
"id": "HP:0100543",
50+
"label": "Cognitive impairment"
51+
},
52+
"excluded": true
53+
},
54+
{
55+
"type": {
56+
"id": "HP:0002063",
57+
"label": "Rigidity"
58+
}
59+
}
60+
],
61+
"interpretations": [
62+
{
63+
"id": "DCymQAPT1zHn52DluN72v4CS",
64+
"progressStatus": "SOLVED",
65+
"diagnosis": {
66+
"disease": {
67+
"id": "OMIM:620923",
68+
"label": "Parkinson disease 26, autosomal dominant, susceptibility to"
69+
},
70+
"genomicInterpretations": [
71+
{
72+
"subjectOrBiosampleId": "CAN1 III-2",
73+
"interpretationStatus": "CAUSATIVE",
74+
"variantInterpretation": {
75+
"acmgPathogenicityClassification": "PATHOGENIC",
76+
"therapeuticActionability": "UNKNOWN_ACTIONABILITY",
77+
"variationDescriptor": {
78+
"id": "c213CtoG_RAB32_NM_006834v5",
79+
"geneContext": {
80+
"valueId": "HGNC:9772",
81+
"symbol": "RAB32"
82+
},
83+
"expressions": [
84+
{
85+
"syntax": "hgvs.c",
86+
"value": "NM_006834.5:c.213C>G"
87+
},
88+
{
89+
"syntax": "hgvs.g",
90+
"value": "NC_000006.12:g.146544084C>G"
91+
},
92+
{
93+
"syntax": "hgvs.p",
94+
"value": "NP_006825.1:p.(Ser71Arg)"
95+
}
96+
],
97+
"vcfRecord": {
98+
"genomeAssembly": "hg38",
99+
"chrom": "chr6",
100+
"pos": 146544084,
101+
"ref": "C",
102+
"alt": "G"
103+
},
104+
"moleculeContext": "genomic",
105+
"allelicState": {
106+
"id": "GENO:0000135",
107+
"label": "heterozygous"
108+
}
109+
}
110+
}
111+
}
112+
]
113+
}
114+
}
115+
],
116+
"diseases": [
117+
{
118+
"term": {
119+
"id": "OMIM:620923",
120+
"label": "Parkinson disease 26, autosomal dominant, susceptibility to"
121+
},
122+
"onset": {
123+
"age": {
124+
"iso8601duration": "P50Y"
125+
}
126+
}
127+
}
128+
],
129+
"metaData": {
130+
"created": "2025-12-07T15:01:39.625179Z",
131+
"createdBy": "0000-0002-0736-9199",
132+
"resources": [
133+
{
134+
"id": "hp",
135+
"name": "human phenotype ontology",
136+
"url": "http://purl.obolibrary.org/obo/hp.owl",
137+
"version": "2025-11-24",
138+
"namespacePrefix": "HP",
139+
"iriPrefix": "http://purl.obolibrary.org/obo/HP_"
140+
},
141+
{
142+
"id": "geno",
143+
"name": "Genotype Ontology",
144+
"url": "http://purl.obolibrary.org/obo/geno.owl",
145+
"version": "2025-07-25",
146+
"namespacePrefix": "GENO",
147+
"iriPrefix": "http://purl.obolibrary.org/obo/GENO_"
148+
},
149+
{
150+
"id": "so",
151+
"name": "Sequence types and features ontology",
152+
"url": "http://purl.obolibrary.org/obo/so.owl",
153+
"version": "2024-11-18",
154+
"namespacePrefix": "SO",
155+
"iriPrefix": "http://purl.obolibrary.org/obo/SO_"
156+
},
157+
{
158+
"id": "omim",
159+
"name": "An Online Catalog of Human Genes and Genetic Disorders",
160+
"url": "https://www.omim.org",
161+
"version": "06/01/25",
162+
"namespacePrefix": "OMIM",
163+
"iriPrefix": "https://www.omim.org/entry/"
164+
},
165+
{
166+
"id": "hgnc",
167+
"name": "HUGO Gene Nomenclature Committee",
168+
"url": "https://www.genenames.org",
169+
"version": "06/01/25",
170+
"namespacePrefix": "HGNC",
171+
"iriPrefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"
172+
}
173+
],
174+
"phenopacketSchemaVersion": "2.0.2",
175+
"externalReferences": [
176+
{
177+
"id": "PMID:38614108",
178+
"description": "RAB32 Ser71Arg in autosomal dominant Parkinson's disease: linkage, association, and functional analyses."
179+
}
180+
]
181+
}
182+
}
Lines changed: 147 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,147 @@
1+
{
2+
"id": "PMID_38614108_CAN1_III_3",
3+
"subject": {
4+
"id": "CAN1 III-3",
5+
"timeAtLastEncounter": {
6+
"age": {
7+
"iso8601duration": "P66Y"
8+
}
9+
},
10+
"sex": "FEMALE"
11+
},
12+
"phenotypicFeatures": [
13+
{
14+
"type": {
15+
"id": "HP:0002548",
16+
"label": "Parkinsonism with favorable response to dopaminergic medication"
17+
}
18+
},
19+
{
20+
"type": {
21+
"id": "HP:0012513",
22+
"label": "Upper limb pain"
23+
}
24+
}
25+
],
26+
"interpretations": [
27+
{
28+
"id": "bLF8EitJxnFDmRezmhQP5bKY",
29+
"progressStatus": "SOLVED",
30+
"diagnosis": {
31+
"disease": {
32+
"id": "OMIM:620923",
33+
"label": "Parkinson disease 26, autosomal dominant, susceptibility to"
34+
},
35+
"genomicInterpretations": [
36+
{
37+
"subjectOrBiosampleId": "CAN1 III-3",
38+
"interpretationStatus": "CAUSATIVE",
39+
"variantInterpretation": {
40+
"acmgPathogenicityClassification": "PATHOGENIC",
41+
"therapeuticActionability": "UNKNOWN_ACTIONABILITY",
42+
"variationDescriptor": {
43+
"id": "c213CtoG_RAB32_NM_006834v5",
44+
"geneContext": {
45+
"valueId": "HGNC:9772",
46+
"symbol": "RAB32"
47+
},
48+
"expressions": [
49+
{
50+
"syntax": "hgvs.c",
51+
"value": "NM_006834.5:c.213C>G"
52+
},
53+
{
54+
"syntax": "hgvs.g",
55+
"value": "NC_000006.12:g.146544084C>G"
56+
},
57+
{
58+
"syntax": "hgvs.p",
59+
"value": "NP_006825.1:p.(Ser71Arg)"
60+
}
61+
],
62+
"vcfRecord": {
63+
"genomeAssembly": "hg38",
64+
"chrom": "chr6",
65+
"pos": 146544084,
66+
"ref": "C",
67+
"alt": "G"
68+
},
69+
"moleculeContext": "genomic",
70+
"allelicState": {
71+
"id": "GENO:0000135",
72+
"label": "heterozygous"
73+
}
74+
}
75+
}
76+
}
77+
]
78+
}
79+
}
80+
],
81+
"diseases": [
82+
{
83+
"term": {
84+
"id": "OMIM:620923",
85+
"label": "Parkinson disease 26, autosomal dominant, susceptibility to"
86+
},
87+
"onset": {
88+
"age": {
89+
"iso8601duration": "P51Y"
90+
}
91+
}
92+
}
93+
],
94+
"metaData": {
95+
"created": "2025-12-07T15:01:39.625207Z",
96+
"createdBy": "0000-0002-0736-9199",
97+
"resources": [
98+
{
99+
"id": "hp",
100+
"name": "human phenotype ontology",
101+
"url": "http://purl.obolibrary.org/obo/hp.owl",
102+
"version": "2025-11-24",
103+
"namespacePrefix": "HP",
104+
"iriPrefix": "http://purl.obolibrary.org/obo/HP_"
105+
},
106+
{
107+
"id": "geno",
108+
"name": "Genotype Ontology",
109+
"url": "http://purl.obolibrary.org/obo/geno.owl",
110+
"version": "2025-07-25",
111+
"namespacePrefix": "GENO",
112+
"iriPrefix": "http://purl.obolibrary.org/obo/GENO_"
113+
},
114+
{
115+
"id": "so",
116+
"name": "Sequence types and features ontology",
117+
"url": "http://purl.obolibrary.org/obo/so.owl",
118+
"version": "2024-11-18",
119+
"namespacePrefix": "SO",
120+
"iriPrefix": "http://purl.obolibrary.org/obo/SO_"
121+
},
122+
{
123+
"id": "omim",
124+
"name": "An Online Catalog of Human Genes and Genetic Disorders",
125+
"url": "https://www.omim.org",
126+
"version": "06/01/25",
127+
"namespacePrefix": "OMIM",
128+
"iriPrefix": "https://www.omim.org/entry/"
129+
},
130+
{
131+
"id": "hgnc",
132+
"name": "HUGO Gene Nomenclature Committee",
133+
"url": "https://www.genenames.org",
134+
"version": "06/01/25",
135+
"namespacePrefix": "HGNC",
136+
"iriPrefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"
137+
}
138+
],
139+
"phenopacketSchemaVersion": "2.0.2",
140+
"externalReferences": [
141+
{
142+
"id": "PMID:38614108",
143+
"description": "RAB32 Ser71Arg in autosomal dominant Parkinson's disease: linkage, association, and functional analyses."
144+
}
145+
]
146+
}
147+
}

0 commit comments

Comments
 (0)