added a GeneticCodes option

Author: mshakya

phame.ctl

@@ -28,6 +28,8 @@
 
     PosSelect = 0  # 0:No; 1:use PAML; 2:use HyPhy; 3:use both
 
+ GeneticCodes = 1 # 1,2,3,4,5,6,9 (see https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi#SG4)
+
          code = 1  # 0:Bacteria; 1:Virus; 2: Eukarya
 
         clean = 0  # 0:no clean; 1:clean