This repository was archived by the owner on Jan 26, 2022. It is now read-only.

[WIP] Tpt2.8: same commits as before but ontop of the newest master.#429

Open

schwancr wants to merge 12 commits intomsmbuilder:masterfrom

schwancr:tpt2.8

Commits on Jul 8, 2014

initial addition for finding paths differently...
schwancr
committed
added new code to do path finding in tpt.py This algorithm is what @brycecr used in msmexplorer as suggested in Frank Noe's paper on TPT. Additionally I re-wrote the dijkstra code so that it's a bi…
schwancr
committed
updated print statements when finding paths.
schwancr
committed
started adding a new tpt test
schwancr
committed
moved stuff in tpt.py around and added citations
schwancr
committed
added a new test for the new path finding code, but commented out the FindPaths test since it was written for the old code. I don't think it's necessary to have a test other than knowing if it actu…
schwancr
committed
regenerated FindPaths reference with the new code. I think this is ok since the other test is an example where I know the answer. It would be nice, however to have a transition matrix with a known …
schwancr
committed
forgot to add the new tpt reference folder for the FindPaths.py test
schwancr
committed
started adding scipy tpt
schwancr
committed
small changes FindPaths.py and indentation fixes in tpt.py
schwancr
committed
got stuff running. fixed print statements
schwancr
committed

Commits on Oct 17, 2014

stuff from quite a while ago...
schwancr
committed