Unzipped files

.gitignore

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+# Compiled files
+/MT2-project-ImageProcessing/plugins/
+*.class
+
+# Archives
+*.zip
+*.tar.gz
+*.tar
+*.rar
+
+# macOS cache files
+.DS_Store
+
+# Temporary files
+*.tmp

MT2-project-ImageProcessing/MT2-project-ImageProcessing.iml

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+<?xml version="1.0" encoding="UTF-8"?>
+<module type="JAVA_MODULE" version="4">
+  <component name="NewModuleRootManager">
+    <output url="file://$MODULE_DIR$/plugins" />
+    <output-test url="file://$MODULE_DIR$/plugins" />
+    <exclude-output />
+    <content url="file://$MODULE_DIR$">
+      <sourceFolder url="file://$MODULE_DIR$/src" isTestSource="false" />
+    </content>
+    <orderEntry type="inheritedJdk" />
+    <orderEntry type="sourceFolder" forTests="false" />
+    <orderEntry type="library" name="ij" level="project" />
+  </component>
+</module>

MT2-project-ImageProcessing/macros/AA_ReadMe.txt

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+This folder contains ImageJ macros. You open a macro file using the
+File->Open command and run it by pressing ctrl-r (File->Run Macro).
+You can also open a macro file by dragging and dropping it on the
+main ImageJ window. You can run a small piece of macro code by selecting
+it in the editor and typing ctrl-r. Some of the files (e.g., MacroSet.txt)
+contain multiple macros that are installed in the editor's "Macros" menu.
+
+Macros located in the ImageJ/plugins folder,  with names containing an
+an underscore ("_") or ending in ".ijm", are installed in the Plugins menu.
+Examples of such macros can be found in ImageJ/plugins/Examples/_Macros.
+
+Macros and macro tools in the ImageJ/macros/StartupMacros.txt file are
+installed in the Plugins>Macros submenu and in the toolbar when ImageJ
+starts. Macros can be assigned keyboard shortcuts. For examples,
+refer to the macros/MacroSet.ijm file. Note that macro shortcuts only
+work when an image window or the ImageJ window has focus.
+
+The tools folder contains tool macros that are added to ImageJ's tool
+bar when you open the file. The toolsets folder contains macro sets
+that are installed in the toolbar's ">>" menu when ImageJ starts.
+
+Information about the macro language (including a 48 page PDF),
+a list of the built in macro functions and more example macros are
+available at
+
+     http://imagej.nih.gov/ij/developer

MT2-project-ImageProcessing/macros/About Startup Macros

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+  Macros and macro tools in ImageJ/macros/StartupMacros.txt
+  are automatically installed in the Plugins>Macros menu and
+  in the toolbar when ImageJ starts. Use the Plugins>Macros>
+  Startup Macros... command to display or edit this file.
+
+  More information is available at:
+  <http://imagej.nih.gov/ij/developer>
+
+

MT2-project-ImageProcessing/macros/AnimatedGaussianBlur.ijm

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+// Animated Gaussian Blur
+//
+// Creates a 51 frame stack containing a copy of the current 
+// image plus copies blurred using the Gaussian Blur filter
+// with the radius varying between 1 and 50.
+
+  if (nImages==0)
+     run("Blobs (25K)");
+  inc=1; max=50;
+  run("Select All");
+  run("Copy");
+  setBatchMode(true);
+  run("Duplicate...", "title=[Animated Gaussian Blur]");
+  slice = 0;
+  for (radius=inc; radius<=max; radius+=inc) {
+     run("Add Slice");
+     run("Paste");
+     run("Gaussian Blur...", "slice radius="+radius);
+     setMetadata("radius="+radius);
+     showProgress(radius, max/inc);
+  }
+  setSlice(1);
+  setMetadata("original");
+  setBatchMode(false);
+  run("Select None");
+  doCommand("Start Animation")

MT2-project-ImageProcessing/macros/AnimationMacros.ijm

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+// These macros allow you to use the 0, 1, 2, etc. 
+// keys to slow down or speed up an animation.
+
+  macro "1 fps [1]" {run("Animation Options...", "speed=1 start");}
+  macro "2 fps [2]" {run("Animation Options...", "speed=2 start");}
+  macro "5 fps [3]" {run("Animation Options...", "speed=5 start");}
+  macro "7.5 fps [4]" {run("Animation Options...", "speed=7.5 start");}
+  macro "10 fps [5]" {run("Animation Options...", "speed=10 start");}
+  macro "15 fps [6]" {run("Animation Options...", "speed=15 start");}
+  macro "20 fps [7]" {run("Animation Options...", "speed=20 start");}
+  macro "30 fps [8]" {run("Animation Options...", "speed=30 start");}
+  macro "60 fps [9]" {run("Animation Options...", "speed=60 start");}

MT2-project-ImageProcessing/macros/BatchModeCalculator.ijm

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+// This macro demonstrates how to use
+// the Image Calculator in batch mode.
+
+  setBatchMode(true);
+  run("Clown (14K)");
+  img1 = getTitle();
+  run("Lena (68K)");
+  img2 = getTitle();
+  run("Image Calculator...", 
+      "image1=&img1 operation=Average image2=&img2 create");
+  run("Rename...", "title=Sum");
+  setBatchMode(false);

MT2-project-ImageProcessing/macros/BatchModeTest.ijm

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+// This macro is an example that shows how to process
+// an image in batch mode and then display the result.
+
+  setBatchMode(true);
+  run("Clown (14K)");
+  makeRectangle(104, 72, 150, 159);
+  run("Fill");
+  run("Select None");
+  run("Rotate... ", "angle=15 interpolation=Bilinear");
+  run("Smooth");
+  run("Find Edges");
+  run("Add...", "value=25");
+  run("Gaussian Blur...", "radius=2");
+  run("Median...", "radius=1");
+  run("Unsharp Mask...", "gaussian=2 mask=0.60");
+  setBatchMode(false); // displays the image

MT2-project-ImageProcessing/macros/Calculations.ijm

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+// The macro interpreter will evaluate expressions and 
+// display the results without having to use the print() 
+// function or having to put a simicolon at the end
+// of each line. 
+
+// Press ctrl+r (Macros>Run Macro) to evaluate the  
+// following expressions. Select one or more lines and
+// press ctrl+r to evaluate just the selected lines. 
+// Press ctrl+e (Macros>Evaluate Line) to evaluate the
+// current line.
+
+  2+2
+  (2.5+1)/3
+  cos(0.7*PI)
+  "2^10=" + pow(2,10)
+  "log(0)=" + log(0)
+  "100 in hex=" + toHex(100)
+  "FF in decimal=" + 0xff; 
+  r = 10
+  "radius=" + r + "mm, area=" + round(PI*r*r) + "mm^2"

MT2-project-ImageProcessing/macros/CompositeSelections.ijm

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+// "CompositeSelections"
+// This macro demonstrates how to create composite selections using
+// makeOval(), makeRectangle() and makePolygon(), in combination 
+// with setKeyDown("shift") (to add selections) and setKeyDown("alt")
+// (to subtract selections).
+
+   width=400; height=400;
+  saveSettings;
+  run("Colors...", "selection=red");
+  newImage("Composite Selections", "8-bit White", 400, 400, 1);
+  setLocation(screenWidth/2-width/2, screenHeight/10);
+  makeOval(110, 94, 156, 156);
+  setKeyDown("alt");
+  makeOval(144, 129, 87, 87);
+  show();
+
+  makeOval(62, 40, 55, 55);
+  setKeyDown("shift");
+  makeOval(246, 49, 60, 60);
+  setKeyDown("shift");
+  makeOval(285, 200, 60, 60);
+  setKeyDown("shift");
+  makeRectangle(136, 254, 58, 58);
+  setKeyDown("shift");
+  makeRectangle(31, 150, 58, 58);
+  show();
+
+  makePolygon(84,182,143,127,212,87,260,124,301,202,290,255,247,253,214,188,190,195,134,249,87,247,116,201);
+  setKeyDown("alt");
+  makePolygon(228,136,158,151,137,189,143,204,193,171,243,183,260,174);
+  setKeyDown("shift");
+  makePolygon(264,70,285,48,311,43,369,76,363,189,322,186,300,140,271,116);
+  show();
+
+  restoreSettings;
+
+
+  function show() {
+     for (i=0; i<10; i++) {
+        run("Invert");
+        wait(150);
+     }
+     wait(1000);
+  }