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error at CMSearch step

Status: Open.

#207 In ncbi/egapx;

· nicolasmalexandre opened on Feb 11, 2026

cmsearch in a single server hangs

Status: Open.

#205 In ncbi/egapx;

· weihongqi opened on Feb 7, 2026

STAR build_index stalling

Status: Open.

#203 In ncbi/egapx;

· ioanaanghel opened on Jan 30, 2026

Issue running 0.5.0 with IsoSeq only

Status: Open.

#202 In ncbi/egapx;

· sheinasim-USDA opened on Jan 28, 2026

Error: (1441.9) Unrecognized file format:

Status: Open.

#201 In ncbi/egapx;

· abdo3a opened on Jan 21, 2026

<code>egapx:gnomon_plane:chainer:run_chainer</code> FAILED

Status: Open.

#198 In ncbi/egapx;

· jianghao0799 opened on Jan 11, 2026

run_gnomon_biotype parameter error

Status: Open.

#197 In ncbi/egapx;

· honghuxian opened on Jan 5, 2026

EGAPx breaking at gnomon_report step

Status: Open.

#188 In ncbi/egapx;

· gpreising opened on Nov 25, 2025

'egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:chainer:run_chainer' run with long time.

Status: Open.

#174 In ncbi/egapx;

· meiyang12 opened on Sep 12, 2025

Use of RNA-seq strand information in EGAPX pipeline

Status: Open.

#172 In ncbi/egapx;

· BitaoQiu opened on Sep 8, 2025

BUG: Treats local read files as SRR, if it supplied as path to read list.

reads errorerror related to long or short readserror related to long or short reads

Status: Open.

#165 In ncbi/egapx;

· Alteroldis opened on Aug 25, 2025

Process <code>egapx:rnaseq_short_plane:bam_bin_and_sort:bam_bin (2)</code> terminated with an error exit status (3)

reads errorerror related to long or short readserror related to long or short reads

Status: Open.

#155 In ncbi/egapx;

· jacquelinemattos opened on Jul 30, 2025