Contemporary hybridization among Arabis floodplain species creates opportunities for adaptation

Rahnamae et al. 2025

Authors:

Neda Rahnamae1,2, Lukas Metzger3,4, Lea Hördemann1, Kevin Korfmann5, Abdul Saboor Khan1, Yasar Özoglan1, Craig I. Dent6,7, Samija Amar6, Raúl Y. Wijfjes8, Tahir Ali1, Gregor Schmitz1, Benjamin Stich9, Aurelien Tellier3, Juliette de Meaux1,*

1Institute for Plant Sciences, Biocenter, Cologne, Germany
2Institute of Plant Ecology and Evolution, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany
3Professorship for Population Genetics, Department of Life Science Systems, Technical University of Munich, Freising, Germany
4Research Department for Limnology, Mondsee, University of Innsbruck, Innsbruck, Austria
5Institute of Ecology and Evolution, University of Oregon, Eugene, OR, USA
6Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Cologne, Germany
7CEPLAS: Cluster of Excellence on Plant Sciences, Heinrich-Heine University, Düsseldorf, Germany
8Faculty of Biology, LMU Munich, Planegg-Martinsried, Germany
9Julius Kühn Institute (JKI), Federal Research Centre for Cultivated Plants, Institute for Breeding Research on Agricultural Crops, Sanitz, Germany *For correspondence (e-mail: jdemeaux@uni-koeln.de). . .

Description

This repository contains the appendix of Rahnamae et al. 2025. It includes supporting materials such as tables, R scripts, Python codes, and other relevant files.
Suppl. File 1. Phenotypic analyses: https://github.com/nedarahnama/Contemporary_hybridization/tree/master/01_phenotypic_analyses
Suppl. File 2. Genome assembly: https://github.com/nedarahnama/Contemporary_hybridization/tree/master/02_genome_assembly
Suppl. File 3. RADseq analysis: https://github.com/nedarahnama/Contemporary_hybridization/tree/master/03_rad_seq
Suppl. File 4. Genetic map construction: https://github.com/nedarahnama/Contemporary_hybridization/tree/master/04_genetic_map
Suppl. File 5. QTL mapping construction: https://github.com/nedarahnama/Contemporary_hybridization/tree/master/05_qtl_mapping
Suppl. File 6. Sweep detection: https://github.com/Luker121/OverlapSweepQTL/tree/main
Suppl. File 7. Flowering time fine mapping analysis: https://github.com/nedarahnama/Contemporary_hybridization/tree/master/06_fine_mapping