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[release_v1]: bump the all-modules group across 1 directory with 4 updates#2283

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[release_v1]: bump the all-modules group across 1 directory with 4 updates#2283
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@dependabot dependabot bot commented on behalf of github Mar 2, 2026

Bumps the all-modules group with 4 updates in the /sda-doa directory: org.springframework.boot:spring-boot-starter-parent, no.elixir:crypt4gh, no.elixir:clearinghouse and org.yaml:snakeyaml.

Updates org.springframework.boot:spring-boot-starter-parent from 4.0.2 to 4.0.3

Release notes

Sourced from org.springframework.boot:spring-boot-starter-parent's releases.

v4.0.3

⭐ New Features

  • Add TWENTY_SIX to JavaVersion enum #49193

🐞 Bug Fixes

  • Jackson properties may not be applied correctly to RestClients #49223
  • ClassNotFoundException when using Actuator without spring-boot-health #49196
  • Using the OTel and Zipkin starters together creates invalid configuration #49183
  • Whitespace can be incorrectly removed when spring-boot-configuration-processor runs on multi-line javadoc #49060
  • Jackson2HttpMessageConvertersConfiguration uses ConditionOn Jackson3 XMLMapper class #49015
  • server.jetty.threads.max is ignored when using virtual threads #48989
  • Slice test includes fail to load when using spring-boot-starter-test-classic #48981
  • Docker credential helpers with file extensions cannot be executed on Windows #48979
  • Java version requirement check for native image is confusing if AOT didn't run #48963
  • TestPropertyValues.Pair.fromMapEntry(Entry<String, String>) does not comply with its nullability contract #48948

📔 Documentation

  • Couchbase and Kafka are incorrectly listed as supporting SSL with Docker Compose #49212
  • Document that use of non idiomatic format for '@Value' still apply for environment variables #49109
  • Document naming convention for custom test-scoped starters #49017
  • Delay removal of Jackson 2 support until 4.3 at the earliest #49010
  • LICENSE.txt and NOTICE.txt files have the wrong content in the latest releases #49003
  • ApplicationContextAssert documents a non-existent assertion in getFailure() #48977
  • Highlight the importance of the preStop hook when configuring Kubernetes probes #48946

🔨 Dependency Upgrades

  • Upgrade to AssertJ 3.27.7 #49095
  • Upgrade to Elasticsearch Client 9.2.5 #49184
  • Upgrade to Groovy 5.0.4 #49097
  • Upgrade to Hibernate 7.2.3.Final #49098
  • Upgrade to Hibernate 7.2.4.Final #49167
  • Upgrade to Jaybird 6.0.4 #49099
  • Upgrade to JBoss Logging 3.6.2.Final #49100
  • Upgrade to Jersey 4.0.2 #49101
  • Upgrade to Jetty 12.1.6 #49102
  • Upgrade to jOOQ 3.19.30 #49103
  • Upgrade to JUnit Jupiter 6.0.3 #49233
  • Upgrade to Logback 1.5.29 #49169
  • Upgrade to Logback 1.5.32 #49245
  • Upgrade to Micrometer 1.16.3 #49111
  • Upgrade to Micrometer Tracing 1.6.3 #49112
  • Upgrade to MongoDB 5.6.3 #49105
  • Upgrade to MySQL 9.6.0 #49106
  • Upgrade to Netty 4.2.10.Final #49107
  • Upgrade to Postgresql 42.7.10 #49202
  • Upgrade to Reactor Bom 2025.0.3 #49087

... (truncated)

Commits
  • 1ab1436 Release v4.0.3
  • 5cc488d Merge branch '3.5.x' into 4.0.x
  • 9138ae2 Next development version (v3.5.12-SNAPSHOT)
  • a7e63a7 Merge branch '3.5.x' into 4.0.x
  • 54ab3c5 Align "noteworthy" issues in release notes with Spring Framework
  • b3ae5b1 Merge branch '3.5.x' into 4.0.x
  • 996664f Temporarily switch Docker to overlay2
  • 1ce8743 Revert "Temporarily disable containerd snapshotter"
  • 5ba88c6 Temporarily disable containerd snapshotter
  • 1f1a88c Revert "Temporarily update system tests to use specific platform"
  • Additional commits viewable in compare view

Updates no.elixir:crypt4gh from 3.0.46 to 3.0.47

Commits
  • b3b0099 [Java]: Bump the all-modules group across 4 directories with 6 updates
  • See full diff in compare view

Updates no.elixir:clearinghouse from 3.0.18 to 3.0.19

Release notes

Sourced from no.elixir:clearinghouse's releases.

clearinghouse-3.0.19

Changelog

[3.0.19] - 2026-02-18

[Java]: Bump the all-modules group across 4 directories with 6 updates

🔧 Other

  • b3b0099 [Java]: Bump the all-modules group across 4 directories with 6 updates
Commits
  • d80f6dd Merge branch 'main' into fix/scrypt_pure_java
  • 04f2285 Merge pull request #409 from ELIXIR-NO/dependabot/gradle/lib/tsd-file-api-cli...
  • 17c062e [TSD-File-API-Client]: bump the all-modules group
  • 7a54fb0 [Clearinghouse]: bump the all-modules group
  • 69f63ec docs(crypt4gh): remove comment mentioning use of native SCrypt
  • 5e2da6d Merge branch 'main' into fix/scrypt_pure_java
  • 3632445 Merge branch 'main' into fix/scrypt_pure_java
  • 9fdd3ff Applied Spotless formatting to new SCrypt.java file
  • 4fcacc2 Removed external dependency for SCrypt in Crypt4GH
  • See full diff in compare view

Updates org.yaml:snakeyaml from 2.5 to 2.6

Commits

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file java Pull requests that update Java code labels Mar 2, 2026
…dates

Bumps the all-modules group with 4 updates in the /sda-doa directory: [org.springframework.boot:spring-boot-starter-parent](https://github.com/spring-projects/spring-boot), [no.elixir:crypt4gh](https://github.com/ELIXIR-NO/FEGA-Norway), [no.elixir:clearinghouse](https://github.com/ELIXIR-NO/FEGA-Norway) and [org.yaml:snakeyaml](https://bitbucket.org/snakeyaml/snakeyaml).


Updates `org.springframework.boot:spring-boot-starter-parent` from 4.0.2 to 4.0.3
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](spring-projects/spring-boot@v4.0.2...v4.0.3)

Updates `no.elixir:crypt4gh` from 3.0.46 to 3.0.47
- [Release notes](https://github.com/ELIXIR-NO/FEGA-Norway/releases)
- [Commits](ELIXIR-NO/FEGA-Norway@crypt4gh-3.0.46...crypt4gh-3.0.47)

Updates `no.elixir:clearinghouse` from 3.0.18 to 3.0.19
- [Release notes](https://github.com/ELIXIR-NO/FEGA-Norway/releases)
- [Commits](ELIXIR-NO/FEGA-Norway@crypt4gh-3.0.18...crypt4gh-3.0.19)

Updates `org.yaml:snakeyaml` from 2.5 to 2.6
- [Commits](https://bitbucket.org/snakeyaml/snakeyaml/branches/compare/snakeyaml-2.6..snakeyaml-2.5)

---
updated-dependencies:
- dependency-name: org.springframework.boot:spring-boot-starter-parent
  dependency-version: 4.0.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-modules
- dependency-name: no.elixir:crypt4gh
  dependency-version: 3.0.47
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-modules
- dependency-name: no.elixir:clearinghouse
  dependency-version: 3.0.19
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-modules
- dependency-name: org.yaml:snakeyaml
  dependency-version: '2.6'
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-modules
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot force-pushed the dependabot/maven/sda-doa/release_v1/all-modules-72a29c61cf branch from 018eeda to b8ffe3d Compare March 6, 2026 08:41
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