[TST] add workflow #1
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| name: Run Notebook | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| # Runs at 9:00 AM Central (14:00 UTC) | |
| - cron: '0 14 * * *' | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| run-notebook: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Extract dependencies from colabtools | |
| run: | | |
| # Download setup.py | |
| curl -s https://raw.githubusercontent.com/googlecolab/colabtools/refs/heads/main/setup.py > setup.py | |
| # Extract DEPENDENCIES using Python | |
| python3 - <<EOF | |
| with open('setup.py', 'r') as f: | |
| content = f.read() | |
| # Find DEPENDENCIES tuple | |
| start = content.find('DEPENDENCIES = (') | |
| end = content.find(')', start) | |
| deps = content[start:end+1] | |
| # Execute the tuple to get the values | |
| exec(deps) | |
| # Write dependencies to requirements file | |
| with open('colab_requirements.txt', 'w') as f: | |
| for dep in DEPENDENCIES: | |
| f.write(f"{dep}\n") | |
| EOF | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| # Install colabtools dependencies | |
| pip install -r colab_requirements.txt | |
| # Install additional required packages | |
| pip install -r requirements.txt | |
| - name: Modify notebook | |
| run: | | |
| # Convert notebook to Python script for easier text processing | |
| jupyter nbconvert --to script run_and_explore.ipynb | |
| # Replace META_ID | |
| sed -i 's/META_ID = ""/META_ID = "36Dm86NVjoTJ"/' run_and_explore.py | |
| # Add no_upload parameter to run function | |
| sed -i 's/url, meta_result = run(META_ID)/url, meta_result = run(META_ID, no_upload=True)/' run_and_explore.py | |
| # Remove View the Report section (everything after the line containing "## View the Report") | |
| sed -i '/^## View the Report/,$d' run_and_explore.py | |
| # Convert back to notebook | |
| jupyter nbconvert --to notebook run_and_explore.py | |
| # Move converted notebook back to original name | |
| mv run_and_explore.nbconvert.ipynb run_and_explore.ipynb | |
| - name: Execute notebook | |
| run: | | |
| jupyter nbconvert --to notebook --execute run_and_explore.ipynb --output executed_notebook.ipynb | |
| - name: Upload notebook | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: executed-notebook | |
| path: executed_notebook.ipynb |