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Run Notebook

Run Notebook #26

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Run Notebook

Run Notebook #26

Workflow file for this run

.github/workflows/run_notebook.yml at 856c855
name: Run Notebook
on:
workflow_dispatch:
schedule:
# Runs at 9:00 AM Central (14:00 UTC)
- cron: '0 14 * * *'
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
run-notebook:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.11
uses: actions/setup-python@v4
with:
python-version: '3.11'
- name: Extract dependencies from colabtools
run: |
# Download setup.py
curl -s https://raw.githubusercontent.com/googlecolab/colabtools/refs/heads/main/setup.py > setup.py
# Extract DEPENDENCIES using Python
python3 - <<EOF
with open('setup.py', 'r') as f:
content = f.read()
# Find DEPENDENCIES tuple
start = content.find('DEPENDENCIES = (')
end = content.find(')', start)
deps = content[start:end+1]
# Execute the tuple to get the values
exec(deps)
# Write dependencies to requirements file
with open('colab_requirements.txt', 'w') as f:
for dep in DEPENDENCIES:
f.write(f"{dep}\n")
EOF
- name: Install dependencies
run: |
python -m pip install --upgrade pip
# Install colabtools dependencies
pip install -r colab_requirements.txt
# Install additional required packages
pip install -r requirements.txt
- name: Modify notebook
run: |
# Convert notebook to Python script for easier text processing
jupyter nbconvert --to script run_and_explore.ipynb
# Remove Setup environment section
sed -i '/#@title Setup environment/,/# In\[ \]:/d' run_and_explore.py
# Replace META_ID
sed -i 's/META_ID = ""/META_ID = "36Dm86NVjoTJ"/' run_and_explore.py
# Add no_upload parameter to run function
sed -i 's/url, meta_result = run(META_ID)/url, meta_result = run(META_ID, no_upload=True)/' run_and_explore.py
# Remove View the Report section (everything after the line containing "# View")
sed -i '/^#@title View/,$d' run_and_explore.py
- name: Execute Python script
run: |
python run_and_explore.py
- name: Upload results
uses: actions/upload-artifact@v4
with:
name: analysis-results
path: |
results/
report/