Reduction Enhancement

This release provides a number of fixes to the workflows, providing stable reduction, calibration, and normalization capabilities.

What's Changed

• Added ability to keep unfocused data for reduction by @dlcaballero16 in #402
• Configure mypy so it can pass by @peterfpeterson in #401
• Indexer 🤖📇 by @rboston628 in #360
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #404
• make sure the finalCalibrationTable is set to the expected table by @walshmm in #400
• Resolve merge conflict between staging and next by @peterfpeterson in #408
• Create dependabot.yml for github-action versions by @peterfpeterson in #409
• Bump actions/checkout from 3 to 4 by @dependabot in #411
• Bump eic/trigger-gitlab-ci from 2 to 3 by @dependabot in #410
• Ewm4986 add new compress events by @darshdinger in #405
• Version integration test 📇 📊 by @rboston628 in #375
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #415
• Reduction pixel-mask I/O by @ekapadi in #403
• Ewm5912 user pixel mask orchestration by @darshdinger in #398
• Fix this issue causing merge issues with staging by @rboston628 in #419
• defect: user pixel mask: incomplete WorkspaceName by @ekapadi in #421
• Fix Diffcal Data Defect by @dlcaballero16 in #413
• Test data key substitution 🏷️ ♻️ by @rboston628 in #417
• (Resolve Staging->Next Conflict) Properly iterate diagnostics 🔂 (#412) by @walshmm in #423
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #424
• Retain reduction-workflow output workspaces by @ekapadi in #426
• make updates for latest setuptools by @walshmm in #430
• Reduce data by @dlcaballero16 in #428
• Defect 6119 by @darshdinger in #429
• Ewm792 reduction continue anyway wo norm or calib by @walshmm in #372
• Ewm6383 truncate edges by @dlcaballero16 in #432
• Merging the changes from PR418 to next by @darshdinger in #433
• Fixed how unfoused data was being kept after reduction by @dlcaballero16 in #436
• unittest.mock.Mock.called_once does not exist by @ekapadi in #438
• Fixes to the iteration dropdown menu. by @darshdinger in #442
• Ewm3146 new calibrant sample property by @dlcaballero16 in #440
• Fixed issue with threshold value not being set in certain cases by @dlcaballero16 in #446
• reduction output-workspace names by @ekapadi in #445
• Updated file paths to point to snapred repo by @dlcaballero16 in #444
• Don't cross the streams! by @rboston628 in #443
• Ewm3098 subtract background by @darshdinger in #449
• Reduction save panel by @ekapadi in #450
• Ewm4848 migrate to run number dao for backend validation by @darshdinger in #453
• Updated mantid version to fix conversion defect by @dlcaballero16 in #454
• Update Test Fixture by @dlcaballero16 in #447
• Ewm 6274 skip pixel calibration by @dlcaballero16 in #455
• Add acceptance critera as part of snapred PR template by @rboston628 in #457
• Ewm7122 implement artificial normalization algo by @darshdinger in #460
• All workflow panels: happy-path integration tests by @ekapadi in #458
• Ewm6834 fix default record by @walshmm in #452
• SNAPRed launch from workbench: redirect IPTS-search directories by @ekapadi in #465
• Create some auxiliary algorithms by @rboston628 in #464
• Ewm7051 add rebinragged back by @dlcaballero16 in #462
• Recipe ABC to enable mandatory input workspaces by @rboston628 in #468
• Fix algo importing so that they may be imported through mantid.simpleapi from other algos by @rboston628 in #471
• Fix purge overlapping peaks by @dlcaballero16 in #470
• Utilize git lfs by @dlcaballero16 in #459
• Enable MantidSnapper and algos to use pointer properties by @rboston628 in #472
• Replace Pixel DiffCal Algorithm with Recipe by @rboston628 in #466
• Bump mamba-org/setup-micromamba from 1 to 2 by @dependabot in #467
• Next -> QA for v1.1.0rc1 by @walshmm in #475
• more auxiliary algos by @rboston628 in #474
• Remove the algorithm/data path by @rboston628 in #477
• Remove unneeded file creation from APIService test by @rboston628 in #478
• Ewm6378 fix full masking in reduction by @darshdinger in #479
• make minor fix to test loading by instrument name by @rboston628 in #481
• Ewm7115 fix remove event background undersampling by @darshdinger in #456
• Group-by-group diffraction calibration recipe by @rboston628 in #476
• EWM7751 replaced save tab of reduction with pop up, removed some noisy warnings by @walshmm in #482
• Rename recipes now that approved by @rboston628 in #483
• sous chef return deep copies of cached objects by @rboston628 in #484
• Purge bad peaks ⛰️ 🪓 by @rboston628 in #480
• reduction: apply pixelmask to unfocused data by @ekapadi in #485
• add new service endpoints for splitting diffcal workflow by @rboston628 in #488
• Ewm7121 refactor art norm by @darshdinger in #487
• Ewm3143 apply diffcal during norm workflow by @walshmm in #469
• actually applies the artifical norm this time, bases the A.N. on redu… by @walshmm in #489
• Added use of MetadataLookupService in the frontend by @dlcaballero16 in #490
• updated normalization workflow to default to diffcal runnumber for its appliesTo field by @walshmm in #492
• remove crop workspace by @walshmm in #491
• un-reverso the removeBackground flag by @rboston628 in #473
• Enable remove background toggle in CIS mode by @rboston628 in #498
• implement fixes by @walshmm in #495
• Ewm7782 diffcal residual addtion by @darshdinger in #493
• Fix to skipping artificial normalization by @rboston628 in #499
• Ewm4868 fix calibrant sample reset norm tab by @darshdinger in #502
• Bump codecov/codecov-action from 4 to 5 by @dependabot in #501
• Cache groupings by state by @rboston628 in #503
• PixelCal before Tweak Peak Peek by @rboston628 in #497
• small fix for skipping pixel cal by @rboston628 in #507
• Handle multiple reduction runs by @rboston628 in #500
• Update ultralite data by @dlcaballero16 in #504
• Ewm6534 fix missing parameters in call to raw vanadium correction algo by @darshdinger in #508
• Ewm6381 fix pixel masks dropdown by @darshdinger in #506
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #496
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #510
• After completion of pixel calibration, show unfocused before and after by @rboston628 in #511
• Reduction process: effective-instrument geometry. by @ekapadi in #461
• Fix workflow presenter to run things from threads by @rboston628 in #514
• Updates required to run SNAPRed by @jarrah42 in #513
• Fix hanging integration tests by @rboston628 in #515
• Oggles of Toggles by @rboston628 in #512
• Get Rid of Noisy FigureManager error log by @walshmm in #494
• Allow user to skip pixelcal after pixelcal by @rboston628 in #517
• Ewm8253 normcal index being misread by @walshmm in #509
• Ewm8373 rebin normalization and reduction output correctly by @walshmm in #520
• Fix conda build failure dec 17 2024 by @walshmm in #522
• Updated integration tests to work with ultralite data by @dlcaballero16 in #516
• Update the use of pointers within certain algorithms by @rboston628 in #523
• Ewm8086 remove background by smoothing before cross-correlation by @rboston628 in #505
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #518
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #524
• Remove check on matching bins by @rboston628 in #527
• added the residual to the normalization workflow by @walshmm in #525
• Remove unused test function by @peterfpeterson in #529
• point to mantid ornl and update rebinragged to use new param by @walshmm in #532
• Simple fix to Defect 8554 by @rboston628 in #526
• Add Grocery keyset for increased safety calling Recipe by @rboston628 in #528
• added togglable lite compression, and override by @walshmm in #533
• Ewm 5538 normalization regression tests by @dlcaballero16 in #531
• fix write permission check by @walshmm in #535
• pull correct peaks (reduction) from cif by @walshmm in #534
• pin mantid to 6.11.0.3 stable for release by @walshmm in #537
• update norm residual to be solid line plot by @walshmm in #538
• Ewm9125 add dictionary overrides diffraction by @darshdinger in #542
• reduction: live-data: complete by @ekapadi in #541
• mutex savenexus calls to prevent segfaults by @walshmm in #544
• Ewm4911 reduction integration tests by @dlcaballero16 in #545
• ReductionRecipe: check fully-masked group using PGP.isMasked flags by @ekapadi in #546
• Historical SNAPInstPrm by @walshmm in #540
• Ewm9433 defect fix spectral edges by @darshdinger in #547
• Ewm9431 exclude wavelengths by @dlcaballero16 in #548
• Don't swallow 'instrument parameters not found' error by @ekapadi in #549
• turn back on cropping for integration tests else memory segfault? by @walshmm in #553
• Added dictionary to MantidSnapper to keep track of workspaces by @dlcaballero16 in #551
• Ewm9401 force use of mantidsnapper by @dlcaballero16 in #555
• Run Feedback Views by @darshdinger in #554
• Revert "Run Feedback Views" by @walshmm in #558
• upgrade mantid to stable for release candidate by @walshmm in #556

New Contributors

• @dependabot made their first contribution in #411
• @jarrah42 made their first contribution in #513

Full Changelog: v1.0.0...v1.1.0