local-gpu-executor repects CUDA_VISIBLE_DEVICES when set#6218
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thealanjason wants to merge 0 commit intonextflow-io:local-gpu-executorfrom
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local-gpu-executor repects CUDA_VISIBLE_DEVICES when set#6218thealanjason wants to merge 0 commit intonextflow-io:local-gpu-executorfrom
thealanjason wants to merge 0 commit intonextflow-io:local-gpu-executorfrom
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I don't know why this PR shows so many changes. |
bentsherman
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Incorporated into #5850 |
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In #5850, if
nextflowis run withCUDA_VISIBLE_DEVICESenvironment variable set before hand, the gpuIDs inCUDA_VISIBLE_DEVICESare ignored when building theavailIdsMap.This PR proposes a fix.
When
executor.gpusis greater than number of devices specified inCUDA_VISIBLE_DEVICES, an error is thrown.If
CUDA_VISIBLE_DEVICESis not set, then the0..ngpuIDs are used to buildavailIdsas before.