Skip to content

docs: Update trace table columns in reports.md #6483

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 2 commits into
base: master
Choose a base branch
from
Open

docs: Update trace table columns in reports.md #6483

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
316f392
Update trace table columns in reports.md
JustinBellavance Oct 13, 2025
4a9153d
Merge branch 'master' into patch-1
JustinBellavance Oct 30, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
42 changes: 21 additions & 21 deletions docs/reports.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -156,27 +156,27 @@ nextflow run <pipeline> -with-trace

It will create a file named `trace.txt` in the current directory. The content looks like the above example:

| task_id | hash | native_id | name | status | exit | submit | duration | walltime | %cpu | rss | vmem | rchar | wchar |
| ------- | --------- | --------- | -------------- | --------- | ---- | ----------------------- | -------- | -------- | ------ | -------- | -------- | -------- | -------- |
| 19 | 45/ab752a | 2032 | blast (1) | COMPLETED | 0 | 2014-10-23 16:33:16.288 | 1m | 5s | 0.0% | 29.8 MB | 354 MB | 33.3 MB | 0 |
| 20 | 72/db873d | 2033 | blast (2) | COMPLETED | 0 | 2014-10-23 16:34:17.211 | 30s | 10s | 35.7% | 152.8 MB | 428.1 MB | 192.7 MB | 1 MB |
| 21 | 53/d13188 | 2034 | blast (3) | COMPLETED | 0 | 2014-10-23 16:34:17.518 | 29s | 20s | 4.5% | 289.5 MB | 381.6 MB | 33.3 MB | 0 |
| 22 | 26/f65116 | 2035 | blast (4) | COMPLETED | 0 | 2014-10-23 16:34:18.459 | 30s | 9s | 6.0% | 122.8 MB | 353.4 MB | 33.3 MB | 0 |
| 23 | 88/bc00e4 | 2036 | blast (5) | COMPLETED | 0 | 2014-10-23 16:34:18.507 | 30s | 19s | 5.0% | 195 MB | 395.8 MB | 65.3 MB | 121 KB |
| 24 | 74/2556e9 | 2037 | blast (6) | COMPLETED | 0 | 2014-10-23 16:34:18.553 | 30s | 12s | 43.6% | 140.7 MB | 432.2 MB | 192.7 MB | 182.7 MB |
| 28 | b4/0f9613 | 2041 | exonerate (1) | COMPLETED | 0 | 2014-10-23 16:38:19.657 | 1m 30s | 1m 11s | 94.3% | 611.6 MB | 693.8 MB | 961.2 GB | 6.1 GB |
| 32 | af/7f2f57 | 2044 | exonerate (4) | COMPLETED | 0 | 2014-10-23 16:46:50.902 | 1m 1s | 38s | 36.6% | 115.8 MB | 167.8 MB | 364 GB | 5.1 GB |
| 33 | 37/ab1fcc | 2045 | exonerate (5) | COMPLETED | 0 | 2014-10-23 16:47:51.625 | 30s | 12s | 59.6% | 696 MB | 734.6 MB | 354.3 GB | 420.4 MB |
| 31 | d7/eabe51 | 2042 | exonerate (3) | COMPLETED | 0 | 2014-10-23 16:45:50.846 | 3m 1s | 2m 6s | 130.1% | 703.3 MB | 760.9 MB | 1.1 TB | 28.6 GB |
| 36 | c4/d6cc15 | 2048 | exonerate (6) | COMPLETED | 0 | 2014-10-23 16:48:48.718 | 3m 1s | 2m 43s | 116.6% | 682.1 MB | 743.6 MB | 868.5 GB | 42 GB |
| 30 | 4f/1ad1f0 | 2043 | exonerate (2) | COMPLETED | 0 | 2014-10-23 16:45:50.961 | 10m 2s | 9m 16s | 95.5% | 706.2 MB | 764 MB | 1.6 TB | 172.4 GB |
| 52 | 72/41d0c6 | 2055 | similarity (1) | COMPLETED | 0 | 2014-10-23 17:13:23.543 | 30s | 352ms | 0.0% | 35.6 MB | 58.3 MB | 199.3 MB | 7.9 MB |
| 57 | 9b/111b5e | 2058 | similarity (6) | COMPLETED | 0 | 2014-10-23 17:13:23.655 | 30s | 488ms | 0.0% | 108.2 MB | 158 MB | 317.1 MB | 9.8 MB |
| 53 | 3e/bca30f | 2061 | similarity (2) | COMPLETED | 0 | 2014-10-23 17:13:23.770 | 30s | 238ms | 0.0% | 6.7 MB | 29.6 MB | 190 MB | 91.2 MB |
| 54 | 8b/d45b47 | 2062 | similarity (3) | COMPLETED | 0 | 2014-10-23 17:13:23.808 | 30s | 442ms | 0.0% | 108.1 MB | 158 MB | 832 MB | 565.6 MB |
| 55 | 51/ac19c6 | 2064 | similarity (4) | COMPLETED | 0 | 2014-10-23 17:13:23.873 | 30s | 6s | 0.0% | 112.7 MB | 162.8 MB | 4.9 GB | 3.9 GB |
| 56 | c3/ec5f4a | 2066 | similarity (5) | COMPLETED | 0 | 2014-10-23 17:13:23.948 | 30s | 616ms | 0.0% | 10.4 MB | 34.6 MB | 238 MB | 8.4 MB |
| 98 | de/d6c0a6 | 2099 | matrix (1) | COMPLETED | 0 | 2014-10-23 17:14:27.139 | 30s | 1s | 0.0% | 4.8 MB | 42 MB | 240.6 MB | 79 KB |
| task_id | hash | native_id | name | status | exit | submit | duration | realtime | %cpu | peak_rss | peak_vmem | rchar | wchar |
| ------- | --------- | --------- | -------------- | --------- | ---- | ----------------------- | -------- | -------- | ------ | --------- | --------- | -------- | -------- |
| 19 | 45/ab752a | 2032 | blast (1) | COMPLETED | 0 | 2014-10-23 16:33:16.288 | 1m | 5s | 0.0% | 29.8 MB | 354 MB | 33.3 MB | 0 |
| 20 | 72/db873d | 2033 | blast (2) | COMPLETED | 0 | 2014-10-23 16:34:17.211 | 30s | 10s | 35.7% | 152.8 MB | 428.1 MB | 192.7 MB | 1 MB |
| 21 | 53/d13188 | 2034 | blast (3) | COMPLETED | 0 | 2014-10-23 16:34:17.518 | 29s | 20s | 4.5% | 289.5 MB | 381.6 MB | 33.3 MB | 0 |
| 22 | 26/f65116 | 2035 | blast (4) | COMPLETED | 0 | 2014-10-23 16:34:18.459 | 30s | 9s | 6.0% | 122.8 MB | 353.4 MB | 33.3 MB | 0 |
| 23 | 88/bc00e4 | 2036 | blast (5) | COMPLETED | 0 | 2014-10-23 16:34:18.507 | 30s | 19s | 5.0% | 195 MB | 395.8 MB | 65.3 MB | 121 KB |
| 24 | 74/2556e9 | 2037 | blast (6) | COMPLETED | 0 | 2014-10-23 16:34:18.553 | 30s | 12s | 43.6% | 140.7 MB | 432.2 MB | 192.7 MB | 182.7 MB |
| 28 | b4/0f9613 | 2041 | exonerate (1) | COMPLETED | 0 | 2014-10-23 16:38:19.657 | 1m 30s | 1m 11s | 94.3% | 611.6 MB | 693.8 MB | 961.2 GB | 6.1 GB |
| 32 | af/7f2f57 | 2044 | exonerate (4) | COMPLETED | 0 | 2014-10-23 16:46:50.902 | 1m 1s | 38s | 36.6% | 115.8 MB | 167.8 MB | 364 GB | 5.1 GB |
| 33 | 37/ab1fcc | 2045 | exonerate (5) | COMPLETED | 0 | 2014-10-23 16:47:51.625 | 30s | 12s | 59.6% | 696 MB | 734.6 MB | 354.3 GB | 420.4 MB |
| 31 | d7/eabe51 | 2042 | exonerate (3) | COMPLETED | 0 | 2014-10-23 16:45:50.846 | 3m 1s | 2m 6s | 130.1% | 703.3 MB | 760.9 MB | 1.1 TB | 28.6 GB |
| 36 | c4/d6cc15 | 2048 | exonerate (6) | COMPLETED | 0 | 2014-10-23 16:48:48.718 | 3m 1s | 2m 43s | 116.6% | 682.1 MB | 743.6 MB | 868.5 GB | 42 GB |
| 30 | 4f/1ad1f0 | 2043 | exonerate (2) | COMPLETED | 0 | 2014-10-23 16:45:50.961 | 10m 2s | 9m 16s | 95.5% | 706.2 MB | 764 MB | 1.6 TB | 172.4 GB |
| 52 | 72/41d0c6 | 2055 | similarity (1) | COMPLETED | 0 | 2014-10-23 17:13:23.543 | 30s | 352ms | 0.0% | 35.6 MB | 58.3 MB | 199.3 MB | 7.9 MB |
| 57 | 9b/111b5e | 2058 | similarity (6) | COMPLETED | 0 | 2014-10-23 17:13:23.655 | 30s | 488ms | 0.0% | 108.2 MB | 158 MB | 317.1 MB | 9.8 MB |
| 53 | 3e/bca30f | 2061 | similarity (2) | COMPLETED | 0 | 2014-10-23 17:13:23.770 | 30s | 238ms | 0.0% | 6.7 MB | 29.6 MB | 190 MB | 91.2 MB |
| 54 | 8b/d45b47 | 2062 | similarity (3) | COMPLETED | 0 | 2014-10-23 17:13:23.808 | 30s | 442ms | 0.0% | 108.1 MB | 158 MB | 832 MB | 565.6 MB |
| 55 | 51/ac19c6 | 2064 | similarity (4) | COMPLETED | 0 | 2014-10-23 17:13:23.873 | 30s | 6s | 0.0% | 112.7 MB | 162.8 MB | 4.9 GB | 3.9 GB |
| 56 | c3/ec5f4a | 2066 | similarity (5) | COMPLETED | 0 | 2014-10-23 17:13:23.948 | 30s | 616ms | 0.0% | 10.4 MB | 34.6 MB | 238 MB | 8.4 MB |
| 98 | de/d6c0a6 | 2099 | matrix (1) | COMPLETED | 0 | 2014-10-23 17:14:27.139 | 30s | 1s | 0.0% | 4.8 MB | 42 MB | 240.6 MB | 79 KB |

(trace-fields)=

Expand Down