Fix listDirectory() to follow symbolic links#6821
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bentsherman merged 2 commits intomasterfrom Feb 10, 2026
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Make listFiles0() parameterized with a followLinks flag so that listFiles() preserves its existing behavior (no symlink following) while listDirectory() follows symbolic links. This avoids the wider blast radius of changing listFiles() behavior which affects task hashing via findBinEntries and other internal callers. Fixes #6807 Generated by Claude Code Signed-off-by: adamrtalbot <12817534+adamrtalbot@users.noreply.github.com>
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bentsherman
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Feb 10, 2026
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Summary
listFiles0()parameterized with afollowLinksflag so thatlistDirectory()follows symbolic links whilelistFiles()preserves its existing behaviorlistFiles()behaviorChanges
listFiles0(self, filter, followLinks)— newboolean followLinksparameter (defaultfalse)listFiles()— callslistFiles0without follow links (unchanged behavior)listDirectory()— callslistFiles0withfollowLinks=trueWhy only
listDirectory()?listFiles()is called internally byfindBinEntries,createLinkImpl, andLocalUpdateRepository. Changing its symlink behavior would silently affect task hashing and other internals. SincelistDirectory()is new in 26.04 (#6581), it has no existing callers to break.Fixes #6807
Supersedes #6808
Test plan
listFiles should not follow symlinked directory— verifieslistFiles()preserves old behaviorlistDirectory should follow symlinked directory— verifieslistDirectory()follows symlinksFilesExTesttests pass