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Ensure main script is the first one in the lineage WorkflowRun record #6845

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Merged
bentsherman merged 3 commits into from
Feb 26, 2026
Merged

Ensure main script is the first one in the lineage WorkflowRun record #6845

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da3621c
Ensure main script is the first one in the lineage WorkflowRun record
jorgee Feb 19, 2026
fe18e5a
Update documentation in Workflow.groovy
bentsherman Feb 26, 2026
3ff02e1
Merge branch 'master' into fix-main-nf-lineage-workflow-run
bentsherman Feb 26, 2026
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4 changes: 2 additions & 2 deletions modules/nf-lineage/src/main/nextflow/lineage/LinObserver.groovy
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Original file line number Diff line number Diff line change
Expand Up @@ -133,7 +133,7 @@ class LinObserver implements TraceObserverV2 {
}

protected List<DataPath> collectScriptDataPaths(PathNormalizer normalizer) {
final allScripts = allScriptFiles()
final allScripts = allScriptFiles().sort()
final result = new ArrayList<DataPath>(allScripts.size()+1)
// the main script
result.add( new DataPath(
Expand All @@ -148,7 +148,7 @@ class LinObserver implements TraceObserverV2 {
final dataPath = new DataPath(normalizer.normalizePath(it.normalize()), Checksum.ofNextflow(it.text))
result.add(dataPath)
}
return result.sort{it.path}
return result
}

protected String storeWorkflowRun(PathNormalizer normalizer) {
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6 changes: 3 additions & 3 deletions modules/nf-lineage/src/test/nextflow/lineage/LinObserverTest.groovy
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Expand Up @@ -114,8 +114,8 @@ class LinObserverTest extends Specification {
def store = new DefaultLinStore();
def uniqueId = UUID.randomUUID()
def scriptFile = folder.resolve("main.nf")
def module1 = folder.resolve("script1.nf"); module1.text = 'hola'
def module2 = folder.resolve("script2.nf"); module2.text = 'world'
def module1 = folder.resolve("a_script1.nf"); module1.text = 'hola'
def module2 = folder.resolve("b_script2.nf"); module2.text = 'world'
and:

def metadata = Mock(WorkflowMetadata){
Expand All @@ -139,7 +139,7 @@ class LinObserverTest extends Specification {
when:
def files = observer.collectScriptDataPaths(new PathNormalizer(metadata))
then:
observer.allScriptFiles() >> [ scriptFile, module1, module2 ]
observer.allScriptFiles() >> [ module2, scriptFile, module1 ]
and:
files.size() == 3
and:
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