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Read exit code from file for successful Google Batch jobs to avoid intermediate states #6848

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Read exit code from file for successful Google Batch jobs to avoid intermediate states #6848

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5 changes: 4 additions & 1 deletion plugins/nf-google/src/main/nextflow/cloud/google/batch/GoogleBatchTaskHandler.groovy
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Original file line number Diff line number Diff line change
Expand Up @@ -669,7 +669,10 @@ class GoogleBatchTaskHandler extends TaskHandler implements FusionAwareTask {
if( state in COMPLETED ) {
log.debug "[GOOGLE BATCH] Process `${task.lazyName()}` - terminated job=$jobId; task=$taskId; state=$state"
// finalize the task
task.exitStatus = getExitCode()
// For SUCCEEDED state, read exit code from .exitcode file to avoid picking up
// intermediate exit codes (e.g., 50001 from spot preemption) from task events.
// For FAILED state, use getExitCode() which checks task events first.
task.exitStatus = (state == 'SUCCEEDED') ? readExitFile() : getExitCode()
if( state == 'FAILED' ) {
// When no exit code or 500XX codes, get the jobError reason from events
if( task.exitStatus == Integer.MAX_VALUE || task.exitStatus >= 50000)
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