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feat: add "recombinant" qc metric #367

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1fddcbb
feat: add "recombinant" qc metric
ivan-aksamentov Oct 17, 2025
b62d258
chore: rebuild
ivan-aksamentov Oct 17, 2025
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4 changes: 4 additions & 0 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,3 +1,7 @@
## Unreleased

Add "recombinant" QC metric

## 2025-09-19T14:53:06Z

- Add all 172 Pango lineages newly designated between 2025-08-01 and 2025-09-18. Unfold below to see a list of all newly included lineages with their designation dates:
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5 changes: 5 additions & 0 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json
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Expand Up @@ -2691,6 +2691,11 @@
"cdsName": "ORF9b"
}
]
},
"recombinants": {
"enabled": true,
"mutationsThreshold": 3,
"scoreWeight": 100.0
}
},
"schemaVersion": "3.0.0",
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13 changes: 10 additions & 3 deletions data_output/index.json
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Expand Up @@ -88,13 +88,21 @@
"mixedSites",
"privateMutations",
"snpClusters",
"stopCodons"
"stopCodons",
"recombinants"
],
"other": [
"mutLabels"
]
},
"versions": [
{
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
}
},
{
"updatedAt": "2025-09-19T14:53:06Z",
"tag": "2025-09-19--14-53-06Z",
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}
],
"version": {
"updatedAt": "2025-09-19T14:53:06Z",
"tag": "2025-09-19--14-53-06Z",
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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