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SC2 with new clades #400

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Merged
corneliusroemer merged 4 commits into from
Jan 6, 2026
Merged

SC2 with new clades #400

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8535acb
Test new builds (not full prior yet)
corneliusroemer Dec 23, 2025
b33bbe2
chore: rebuild [skip ci]
nextstrain-bot Dec 23, 2025
1bf224a
Update with priors
corneliusroemer Jan 6, 2026
d7d432a
chore: rebuild [skip ci]
nextstrain-bot Jan 6, 2026
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397 changes: 397 additions & 0 deletions data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md
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2,373 changes: 1,731 additions & 642 deletions data/nextstrain/sars-cov-2/BA.2.86/pathogen.json
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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2.86/tree.json
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397 changes: 397 additions & 0 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md
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2,373 changes: 1,731 additions & 642 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json
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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/tree.json
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397 changes: 397 additions & 0 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md
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2,373 changes: 1,731 additions & 642 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/pathogen.json
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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/tree.json
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60 changes: 39 additions & 21 deletions data_output/index.json
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Original file line number Diff line number Diff line change
Expand Up @@ -74,13 +74,13 @@
"treeJson": "tree.json"
},
"capabilities": {
"clades": 53,
"clades": 59,
"customClades": {
"Nextclade_pango": 4654,
"partiallyAliased": 4654,
"clade_nextstrain": 53,
"Nextclade_pango": 4731,
"partiallyAliased": 4731,
"clade_nextstrain": 59,
"clade_who": 13,
"clade_display": 53
"clade_display": 59
},
"qc": [
"frameShifts",
Expand All @@ -95,6 +95,13 @@
]
},
"versions": [
{
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
}
},
{
"updatedAt": "2025-12-05T10:40:14Z",
"tag": "2025-12-05--10-40-14Z",
Expand Down Expand Up @@ -265,8 +272,7 @@
}
],
"version": {
"updatedAt": "2025-12-05T10:40:14Z",
"tag": "2025-12-05--10-40-14Z",
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down Expand Up @@ -315,13 +321,13 @@
"treeJson": "tree.json"
},
"capabilities": {
"clades": 53,
"clades": 59,
"customClades": {
"Nextclade_pango": 4654,
"partiallyAliased": 4654,
"clade_nextstrain": 53,
"Nextclade_pango": 4731,
"partiallyAliased": 4731,
"clade_nextstrain": 59,
"clade_who": 13,
"clade_display": 53
"clade_display": 59
},
"qc": [
"frameShifts",
Expand All @@ -336,6 +342,13 @@
]
},
"versions": [
{
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
}
},
{
"updatedAt": "2025-12-05T10:40:14Z",
"tag": "2025-12-05--10-40-14Z",
Expand Down Expand Up @@ -482,8 +495,7 @@
}
],
"version": {
"updatedAt": "2025-12-05T10:40:14Z",
"tag": "2025-12-05--10-40-14Z",
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down Expand Up @@ -531,13 +543,13 @@
"treeJson": "tree.json"
},
"capabilities": {
"clades": 30,
"clades": 36,
"customClades": {
"Nextclade_pango": 3918,
"partiallyAliased": 3918,
"clade_nextstrain": 30,
"Nextclade_pango": 3995,
"partiallyAliased": 3995,
"clade_nextstrain": 36,
"clade_who": 3,
"clade_display": 30
"clade_display": 36
},
"qc": [
"frameShifts",
Expand All @@ -553,6 +565,13 @@
]
},
"versions": [
{
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
}
},
{
"updatedAt": "2025-12-05T10:40:14Z",
"tag": "2025-12-05--10-40-14Z",
Expand Down Expand Up @@ -723,8 +742,7 @@
}
],
"version": {
"updatedAt": "2025-12-05T10:40:14Z",
"tag": "2025-12-05--10-40-14Z",
"tag": "unreleased",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
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