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Create python package #3

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b24a068
setup, requirements, script -> code
hgoerzig Aug 9, 2021
0e59b28
.gitignore, git rm
hgoerzig Aug 9, 2021
eed3470
removed dublicated requirements and changed url path in setup.py
hgoerzig Aug 19, 2021
17130b5
updated readme
hgoerzig Aug 19, 2021
3b4d830
updated README.md
hgoerzig Aug 20, 2021
2e3bab7
Remove commented code line 109. Comment https://github.com/nexusforma…
hgoerzig Oct 1, 2021
1805985
Remove commented code: Parameter configuration
hgoerzig Oct 4, 2021
0110816
str(file.path).endswith('nxdl.xml') if not deprecationAttribute == ''
hgoerzig Oct 4, 2021
c53afac
created : classname_fields from classDict[className]['fields']
hgoerzig Oct 4, 2021
d6de196
removed extra lines and comments
hgoerzig Oct 4, 2021
8552a5b
line break
hgoerzig Oct 4, 2021
e013280
use append
hgoerzig Oct 4, 2021
04d17ce
use join
hgoerzig Oct 4, 2021
1a058be
Do not use wildcard imports
hgoerzig Oct 4, 2021
9093103
Create functions
hgoerzig Oct 6, 2021
ad6fadf
Organise globals
hgoerzig Oct 7, 2021
f33f21e
FIX #1 add conda environment
prjemian Dec 15, 2021
9355dff
DOC #3 describe conda usage, apply md formatting
prjemian Dec 15, 2021
9ca1d68
MNT #1 typo
prjemian Dec 15, 2021
2ccdd90
MNT #3 git should ignore some things
prjemian Dec 15, 2021
1159d44
Functions called by main now
hgoerzig Jan 12, 2022
33139c0
Added entry point for console script
hgoerzig Jan 12, 2022
8862cf2
Merge branch 'createpackage' of https://github.com/nexusformat/NeXusO…
hgoerzig Jan 13, 2022
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0 script/NeXusOntology_V1.1.ipynb → .../jupyterNotebook/NeXusOntology_V1.1.ipynb
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15 changes: 15 additions & 0 deletions code/nxsOnto/README.md
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**NeXusOntology creation script**

Ensure that owlready2 and pygithub are installed (pip install) by running the requirements.txt

Add four parameters when running the code:
python3 -m nxsOnto.generator [github access token] [out path for ontology] [temporary file path]

To get a Github access token:
Github/settings/developer settings/personal access tokens/create new token

Some deprecation warnings are likely to be displayed before the .owl file is created.

The .owl file (RDF/XML syntax) can be opened by a text editor or ontology tool such as Protege (https://protege.stanford.edu/)

See ontology metadata for more information.
Empty file added code/nxsOnto/nxsOnto/__init__.py
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