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fix-linting.yml
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Follow up #436 Fix linting from a comment #194: Issue comment #437 (comment) created by JoseEspinosa
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Feature Request: call peaks for each replicate (diffbind), not only the merged data Fix linting from a comment #193: Issue comment #367 (comment) created by ggrimes
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Implement all additional nf-test (not default) Fix linting from a comment #192: Issue comment #430 (comment) created by JoseEspinosa
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Merging-template-3.3.2 Fix linting from a comment #191: Issue comment #425 (comment) created by nf-core-bot
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Important! Template update for nf-core/tools v3.3.2 Fix linting from a comment #190: Issue comment #423 (comment) created by nf-core-bot
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Important! Template update for nf-core/tools v3.3.1 Fix linting from a comment #189: Issue comment #422 (comment) created by nf-core-bot
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ERROR ~ Error executing process > 'NFCORE_ATACSEQ:ATACSEQ:FASTQ_FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE Fix linting from a comment #188: Issue comment #377 (comment) created by yushuen
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Hsmurali atac seq verified Fix linting from a comment #187: Issue comment #383 (comment) created by JoseEspinosa
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Reduce available memory for Picard Mark Duplicates Fix linting from a comment #186: Issue comment #272 (comment) created by JoseEspinosa
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Nextflow log does not show run time and status Fix linting from a comment #185: Issue comment #400 (comment) created by SuhasSrinivasan
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CSI Implementation for Larger Genomes Fix linting from a comment #184: Issue comment #414 (comment) created by JoseEspinosa
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Nextflow log does not show run time and status Fix linting from a comment #183: Issue comment #400 (comment) created by JoseEspinosa
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Please change default MACS2 peak calling to narrow peak Fix linting from a comment #182: Issue comment #403 (comment) created by SuhasSrinivasan
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Issue when rerunning the pipeline for MACS2 narrow peak Fix linting from a comment #181: Issue comment #402 (comment) created by SuhasSrinivasan
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FastQC uses only 10 cores in a 32 core server Fix linting from a comment #180: Issue comment #404 (comment) created by SuhasSrinivasan
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Add GRCm39 option to config Fix linting from a comment #179: Issue comment #273 (comment) created by JoseEspinosa
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AttributeError: module 'matplotlib.cm' has no attribute 'register_cmap' Fix linting from a comment #178: Issue comment #376 (comment) created by JoseEspinosa
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Picard "--TMP_DIR" arguments are hardcoded Fix linting from a comment #177: Issue comment #378 (comment) created by JoseEspinosa
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the sample field from the samplesheet is too lenient Fix linting from a comment #176: Issue comment #338 (comment) created by JoseEspinosa
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Process terminated for an unknown reason (SLURM) Fix linting from a comment #175: Issue comment #339 (comment) created by JoseEspinosa
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deprecated container formats Fix linting from a comment #174: Issue comment #361 (comment) created by JoseEspinosa
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Issue when rerunning the pipeline for MACS2 narrow peak Fix linting from a comment #173: Issue comment #402 (comment) created by JoseEspinosa
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Sorting bedgraph using gnu sort instead of bedtools sort Fix linting from a comment #172: Issue comment #390 (comment) created by JoseEspinosa
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Please change default MACS2 peak calling to narrow peak Fix linting from a comment #171: Issue comment #403 (comment) created by JoseEspinosa
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FastQC uses only 10 cores in a 32 core server Fix linting from a comment #170: Issue comment #404 (comment) created by JoseEspinosa
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