Also move getMacsGsize declaration

Author: JoseEspinosa

main.nf

@@ -146,7 +146,6 @@ workflow {
 //
 // Get attribute from genome config file e.g. fasta
 //
-
 def getGenomeAttribute(attribute) {
     if (params.genomes && params.genome && params.genomes.containsKey(params.genome)) {
         if (params.genomes[ params.genome ].containsKey(attribute)) {
@@ -156,6 +155,21 @@ def getGenomeAttribute(attribute) {
     return null
 }
 
+//
+// Get macs genome size (macs_gsize)
+//
+def getMacsGsize(params) {
+    def val = null
+    if (params.genomes && params.genome && params.genomes.containsKey(params.genome)) {
+        if (params.genomes[ params.genome ].containsKey('macs_gsize')) {
+            if (params.genomes[ params.genome ][ 'macs_gsize' ].containsKey(params.read_length.toString())) {
+                val = params.genomes[ params.genome ][ 'macs_gsize' ][ params.read_length.toString() ]
+            }
+        }
+    }
+    return val
+}
+
 /*
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     THE END

subworkflows/local/utils_nfcore_chipseq_pipeline/main.nf

@@ -178,17 +178,17 @@ def genomeExistsError() {
 //
 // Get macs genome size (macs_gsize)
 //
-def getMacsGsize(params) {
-    def val = null
-    if (params.genomes && params.genome && params.genomes.containsKey(params.genome)) {
-        if (params.genomes[ params.genome ].containsKey('macs_gsize')) {
-            if (params.genomes[ params.genome ][ 'macs_gsize' ].containsKey(params.read_length.toString())) {
-                val = params.genomes[ params.genome ][ 'macs_gsize' ][ params.read_length.toString() ]
-            }
-        }
-    }
-    return val
-}
+// def getMacsGsize(params) {
+//     def val = null
+//     if (params.genomes && params.genome && params.genomes.containsKey(params.genome)) {
+//         if (params.genomes[ params.genome ].containsKey('macs_gsize')) {
+//             if (params.genomes[ params.genome ][ 'macs_gsize' ].containsKey(params.read_length.toString())) {
+//                 val = params.genomes[ params.genome ][ 'macs_gsize' ][ params.read_length.toString() ]
+//             }
+//         }
+//     }
+//     return val
+// }
 
 //
 // Generate methods description for MultiQC