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Fix ci
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.github/workflows/ci.yml

Lines changed: 1 addition & 8 deletions
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@@ -33,13 +33,6 @@ jobs:
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- "conda"
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- "docker"
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- "singularity"
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test_name:
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- "test"
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- "skip_trimming"
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- "skip_consensus_peaks"
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- "bowtie2"
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- "chromap"
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- "star"
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parameters:
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- ""
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- "--skip_trimming"
@@ -94,7 +87,7 @@ jobs:
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- name: Clean up Disk space
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uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
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- name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
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- name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.parameters }} | ${{ matrix.profile }}"
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continue-on-error: ${{ matrix.NXF_VER == 'latest-everything' }}
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run: |
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nextflow run ${GITHUB_WORKSPACE} -profile test,${{ matrix.profile }} --outdir ./results ${{ matrix.parameters }}

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