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Update nci_gadi.config #872

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Update nci_gadi.config #872

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7f1ff0e
Update nci_gadi.config
kisarur Mar 25, 2025
c696792
Merge branch 'master' into nci_gadi_update
jfy133 Jun 18, 2025
ef0c400
Merge branch 'master' into nci_gadi_update
kisarur Aug 5, 2025
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7 changes: 4 additions & 3 deletions conf/nci_gadi.config
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Original file line number Diff line number Diff line change
@@ -1,9 +1,10 @@
// NCI Gadi nf-core configuration profile
params {
config_profile_description = 'NCI Gadi HPC profile provided by nf-core/configs'
config_profile_contact = 'Georgie Samaha (@georgiesamaha), Matthew Downton (@mattdton)'
config_profile_contact = 'Georgie Samaha (@georgiesamaha), Kisaru Liyanage (@kisarur)'
config_profile_url = 'https://opus.nci.org.au/display/Help/Gadi+User+Guide'
project = System.getenv("PROJECT")
storage = "gdata/${params.project}+scratch/${params.project}"
}

// Enable use of Singularity to run containers
Expand All @@ -25,8 +26,8 @@ executor {
// Define process resource limits
process {
executor = 'pbspro'
project = System.getenv("PROJECT")
storage = 'scratch/params.project'
project = "${params.project}"
storage = "${params.storage}"
module = 'singularity'
cache = 'lenient'
stageInMode = 'symlink'
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