[WIP] Add the Brain Image Library (BIL) cluster profile#890
[WIP] Add the Brain Image Library (BIL) cluster profile#890icaoberg wants to merge 10 commits intonf-core:masterfrom
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| // Profiles | ||
| // ───────────────────────────────────────────────────────────────────────────── | ||
| profiles { | ||
| compute { |
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I this a reason why this is a separate profile - given you have a single entry?
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we have multiple partitions but only adding the public at the moment.
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I see - however you don't need a specific profile for a specific partition - you can tell Nextflow to dynamically pick the queue based on whatever variables you want to use rather than having to explicitly request it.
So I would move everything in this profile into the base config, and when you need to add additional partitions we can update the profile to be dynamic.
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| } | ||
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You may want to consider the cleanup option: https://www.nextflow.io/docs/latest/reference/config.html#unscoped-options to reduce HDD space after successful completion.
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
Fixed typo. Named profile correctly. Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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Feel free to request a re-review when you're ready @icaoberg |
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@icaoberg any progress on this? |
name: Brain Image Library analysis ecosystem
about: A new cluster config
Followed the steps to add a new cluster config for the [Brain Image Library Analysis Ecosystem].(https://www.brainimagelibrary.org/)
conf/directorydocs/directorynfcore_custom.configfile in the top-level directoryREADME.mdfile in the top-level directoryprofile:scope in.github/workflows/main.yml.github/CODEOWNERS(**/<custom-profile>** @<github-username>)