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pontus
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Sep 27, 2025
jfy133
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Sep 29, 2025
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Thanks James. We will speak to the HPC admins this week at Newcastle University (UK). To ensure all those issues are resolved. |
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Added comments to clarify config parameters.
Updated Newcastle HPC configuration documentation with detailed usage notes, installation steps for Java and Nextflow, and troubleshooting tips.
Updated documentation to reflect the name change from Singularity to Apptainer and specified its availability on the comet system.
For non nf-core running pipelines
jfy133
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Mar 19, 2026
Added in correct resource limits section
jfy133
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Preemptive ✔️ once the relevant URL is added to the config description.
In the meantime @chriswyatt1 you could probably just point to the Newcastle University's homepage
Add URL to Newcastle. Would be better to the actual docs of comet, but this is here for now.
Add specific that its UK Newcastle University Pseudonym: University of Newcastle upon Tyne
Add link to official page in docs
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HPC administration group will do checks on Monday. So hopefully then we can merge it. Thanks James! |
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name: New Config
about: A new cluster config
Please follow these steps before submitting your PR:
[WIP]in its titlemasterbranchSteps for adding a new config profile:
conf/directorydocs/directorynfcore_custom.configfile in the top-level directoryprofile:scope in.github/workflows/main.yml.github/CODEOWNERS(**/<custom-profile>** @<github-username>)