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optimized resources #269

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optimized resources #269

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25 changes: 25 additions & 0 deletions conf/test_full.config
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Original file line number Diff line number Diff line change
Expand Up @@ -17,3 +17,28 @@ params {
// File containing SRA ids from nf-core/rnaseq -profile test_full for full-sized test
input = 'https://raw.githubusercontent.com/nf-core/test-datasets/100736c99d87667fb7c247c267bc8acfac647bed/testdata/v1.12.0/sra_ids_rnaseq_test_full.csv'
}

process {
withName: 'NFCORE_FETCHNGS:SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS' {
cpus = { 1 * task.attempt }
memory = { 1.GB * task.attempt }
}
withName: 'NFCORE_FETCHNGS:SRA:MULTIQC_MAPPINGS_CONFIG' {
cpus = { 1 * task.attempt }
memory = { 1.GB * task.attempt }
}
withName: 'NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP' {
cpus = { 1 * task.attempt }
memory = { 1.GB * task.attempt }
}
withName: 'NFCORE_FETCHNGS:SRA:SRA_IDS_TO_RUNINFO' {
cpus = { 1 * task.attempt }
memory = { 1.GB * task.attempt }
}
withName: 'NFCORE_FETCHNGS:SRA:SRA_RUNINFO_TO_FTP' {
cpus = { 1 * task.attempt }
memory = { 1.GB * task.attempt }
}
errorStrategy = 'retry'
maxRetries = 2
}
Comment on lines +21 to +44
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@adamrtalbot adamrtalbot Feb 6, 2024

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That seems...optimistic.

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@edmundmiller edmundmiller Feb 7, 2024

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Guess platform is an optimist 🙃

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@adamrtalbot adamrtalbot Feb 7, 2024

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Yes it is. Can we get some proof it works, perhaps with a big test?