[Do not merge!] Pseudo PR for first release #31
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integrate divergent branches
Dev preprocessing
Updating Container Images + Improved File staging + MultiQC
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.3.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
bump version + cleanup + multiqc update
Fix for failing github actions workflow
mashehu
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Nov 6, 2025
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mashehu
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mashehu
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Part one of my review.
Because I saw some typos, a useful vs code extension for that is https://marketplace.visualstudio.com/items?itemName=streetsidesoftware.code-spell-checker
fix incorrect file permissions
Fixes for the release
Co-authored-by: Famke Bäuerle <[email protected]>
Co-authored-by: Matthias Hörtenhuber <[email protected]>
Co-authored-by: Matthias Hörtenhuber <[email protected]>
apply suggestions from code review, typos
fix typos, add test_full
optimizing resources, fix stagefiles for large datasets
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Do not merge! This is a PR of
devcompared to theTEMPLATEbranch for whole-pipeline reviewing purposes. Changes should be made todevand this PR should not be merged!