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First Release #33

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CaroAMN wants to merge 282 commits intomasterfrom
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First Release #33
CaroAMN wants to merge 282 commits intomasterfrom
dev

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@CaroAMN CaroAMN commented Nov 4, 2025

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/lsmquant branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

CaroAMN and others added 30 commits February 16, 2025 09:38
Major Update

tests are failing because test profile hasn't been set up yet
new module and subworkflow test
updated test profile and docs
Update documentation + new metromap
CaroAMN and others added 30 commits February 19, 2026 13:41
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
Adding review suggestions
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
Adding Review feedback
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
adding review suggestions
update ara subworkflow
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8 participants