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Fix linting from a comment

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fix_linting.yml
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Release 2.2.2 Fix linting from a comment #12: Issue comment #104 (comment) created by charles-plessy
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Adjust process requirements to test_full case. Fix linting from a comment #11: Issue comment #61 (comment) created by charles-plessy
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last/train records the wrong value for percent identity. Fix linting from a comment #10: Issue comment #96 (comment) created by takiifujita-ui
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Adjust process requirements to test_full case. Fix linting from a comment #9: Issue comment #61 (comment) created by charles-plessy
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Adjust process requirements to test_full case. Fix linting from a comment #8: Issue comment #61 (comment) created by charles-plessy
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MultiQC to include line/scatter plot Fix linting from a comment #7: Issue comment #93 (comment) created by johannesnicolaus
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MultiQC to include line/scatter plot Fix linting from a comment #6: Issue comment #93 (comment) created by charles-plessy
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Multi-sequence CRAM output Fix linting from a comment #5: Issue comment #60 (comment) created by charles-plessy
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nf-core logo does not look pristine in the subway map. Fix linting from a comment #4: Issue comment #90 (comment) created by charles-plessy
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Update diagram Fix linting from a comment #3: Issue comment #68 (comment) created by charles-plessy
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On the tube map, the MAF files are not clearly labeled as output Fix linting from a comment #2: Issue comment #75 (comment) created by charles-plessy
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Mention module names in the tube map Fix linting from a comment #1: Issue comment #74 (comment) created by charles-plessy
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