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Fix #896
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CHANGELOG.md

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@@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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- Bump minimum Nextflow version from `21.10.3` -> `22.10.1`
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- Updated pipeline template to [nf-core/tools 2.7.1](https://github.com/nf-core/tools/releases/tag/2.7.1)
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- [[#896](https://github.com/nf-core/rnaseq/issues/896)] - Remove `copyTo` call for iGenomes README
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- [[#897](https://github.com/nf-core/rnaseq/issues/897)] - Use `--skip_preseq` by default
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### Parameters

workflows/rnaseq.nf

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@@ -56,13 +56,6 @@ if (params.bam_csi_index) {
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}
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}
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// Save AWS IGenomes file containing annotation version
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def anno_readme = params.genomes[ params.genome ]?.readme
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if (anno_readme && file(anno_readme).exists()) {
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file("${params.outdir}/genome/").mkdirs()
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file(anno_readme).copyTo("${params.outdir}/genome/")
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}
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// Stage dummy file to be used as an optional input where required
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ch_dummy_file = file("$projectDir/assets/dummy_file.txt", checkIfExists: true)
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