use nft-utils 0.0.2 to get relative path in snapshots

Author: maxulysse

nf-test.config

@@ -13,6 +13,6 @@ config {
     // load the necessary plugins
     plugins {
         load "[email protected]"
-        load "[email protected].1"
+        load "[email protected].2"
     }
 }

tests/default.nf.test

@@ -23,8 +23,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }
@@ -54,8 +54,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }

tests/default.nf.test.snap

@@ -24,8 +24,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }
@@ -56,8 +56,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }

tests/featurecounts_group_type.nf.test

@@ -24,8 +24,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }
@@ -56,8 +56,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }