Update all modules / subworkflows

Author: drpatelh

CHANGELOG.md

@@ -15,7 +15,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 | Dependency | Old version | New version |
 | ---------- | ----------- | ----------- |
-| `fastp`    | 0.23.2      | 0.23.3      |
+| `fastp`    | 0.23.2      | 0.23.4      |
 | `samtools` | 1.16.1      | 1.17        |
 
 > **NB:** Dependency has been **updated** if both old and new version information is present.

modules.json

@@ -27,8 +27,8 @@
                     },
                     "fastp": {
                         "branch": "master",
-                        "git_sha": "37a98dd100d74d9188a272197663587de1331a0e",
-                        "installed_by": ["modules", "fastq_fastqc_umitools_fastp"]
+                        "git_sha": "d497a4868ace3302016ea8ed4b395072d5e833cd",
+                        "installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
                     },
                     "fastqc": {
                         "branch": "master",
@@ -52,22 +52,22 @@
                     },
                     "hisat2/align": {
                         "branch": "master",
-                        "git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
+                        "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
                         "installed_by": ["fastq_align_hisat2"]
                     },
                     "hisat2/build": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
                         "installed_by": ["modules"]
                     },
                     "hisat2/extractsplicesites": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
                         "installed_by": ["modules"]
                     },
                     "picard/markduplicates": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
                         "installed_by": ["bam_markduplicates_picard"]
                     },
                     "preseq/lcextrap": {
@@ -166,7 +166,7 @@
                     },
                     "samtools/stats": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
                         "installed_by": ["bam_stats_samtools"]
                     },
                     "sortmerna": {
@@ -176,7 +176,7 @@
                     },
                     "star/align": {
                         "branch": "master",
-                        "git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
+                        "git_sha": "57d75dbac06812c59798a48585032f6e50bb1914",
                         "installed_by": ["modules"]
                     },
                     "star/genomegenerate": {
@@ -230,7 +230,7 @@
                 "nf-core": {
                     "bam_dedup_stats_samtools_umitools": {
                         "branch": "master",
-                        "git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
+                        "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
                         "installed_by": ["subworkflows"]
                     },
                     "bam_markduplicates_picard": {
@@ -245,16 +245,16 @@
                     },
                     "bam_sort_stats_samtools": {
                         "branch": "master",
-                        "git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
+                        "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
                         "installed_by": ["fastq_align_hisat2"]
                     },
                     "bam_stats_samtools": {
                         "branch": "master",
-                        "git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
+                        "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
                         "installed_by": [
+                            "bam_dedup_stats_samtools_umitools",
                             "bam_markduplicates_picard",
-                            "bam_sort_stats_samtools",
-                            "bam_dedup_stats_samtools_umitools"
+                            "bam_sort_stats_samtools"
                         ]
                     },
                     "bedgraph_bedclip_bedgraphtobigwig": {