Merge pull request #1031 from nf-core/public_aws_ecr_profile_fix

Fix for public_aws_ecr profile that didn't match modules sometimes

Author: drpatelh

conf/public_aws_ecr.config

@@ -12,43 +12,49 @@ docker.registry = 'public.ecr.aws'
 podman.registry = 'public.ecr.aws'
 
 process {
-    withName: '.*:CAT_FASTQ' {
+    withName: 'CAT_FASTQ' {
         container = 'quay.io/nf-core/ubuntu:20.04'
     }
-    withName: '.*:DESEQ2_QC' {
+    withName: 'SAMPLESHEET_CHECK|CAT_ADDITIONAL_FASTA|GTF_GENE_FILTER|MULTIQC_CUSTOM_BIOTYPE|SALMON_TX2GENE' {
+        container = 'quay.io/biocontainers/python:3.9--1'
+    }
+    withName: 'GTF2BED' {
+        container = 'quay.io/biocontainers/perl:5.26.2'
+    }
+    withName: 'DESEQ2_QC' {
         container = 'quay.io/biocontainers/mulled-v2-8849acf39a43cdd6c839a369a74c0adc823e2f91:ab110436faf952a33575c64dd74615a84011450b-0'
     }
-    withName: '.*:GUNZIP' {
+    withName: 'GUNZIP' {
         container = 'quay.io/nf-core/ubuntu:20.04'
     }
-    withName: '.*:HISAT2_ALIGN' {
+    withName: 'HISAT2_ALIGN' {
         container = 'quay.io/biocontainers/mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1:2cdf6bf1e92acbeb9b2834b1c58754167173a410-0'
     }
-    withName: '.*:PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' {
+    withName: 'PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' {
         container = 'quay.io/nf-core/ubuntu:20.04'
     }
-    withName: '.*:RSEM_CALCULATEEXPRESSION' {
+    withName: 'RSEM_CALCULATEEXPRESSION' {
         container = 'quay.io/biocontainers/mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b:64aad4a4e144878400649e71f42105311be7ed87-0'
     }
-    withName: '.*:RSEM_MERGE_COUNTS' {
+    withName: 'RSEM_MERGE_COUNTS' {
         container = 'quay.io/nf-core/ubuntu:20.04'
     }
-    withName: '.*:RSEM_PREPAREREFERENCE' {
+    withName: 'RSEM_PREPAREREFERENCE' {
         container = 'quay.io/biocontainers/mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b:64aad4a4e144878400649e71f42105311be7ed87-0'
     }
-    withName: '.*:STAR_ALIGN' {
+    withName: 'STAR_ALIGN' {
         container = 'quay.io/biocontainers/mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:1df389393721fc66f3fd8778ad938ac711951107-0'
     }
-    withName: '.*:STAR_ALIGN_IGENOMES' {
+    withName: 'STAR_ALIGN_IGENOMES' {
         container = 'quay.io/biocontainers/mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:59cdd445419f14abac76b31dd0d71217994cbcc9-0'
     }
-    withName: '.*:STAR_GENOMEGENERATE' {
+    withName: 'STAR_GENOMEGENERATE' {
         container = 'quay.io/biocontainers/mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:1df389393721fc66f3fd8778ad938ac711951107-0'
     }
-    withName: '.*:STAR_GENOMEGENERATE_IGENOMES' {
+    withName: 'STAR_GENOMEGENERATE_IGENOMES' {
         container = 'quay.io/biocontainers/mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:59cdd445419f14abac76b31dd0d71217994cbcc9-0'
     }
-    withName: '.*:UNTAR' {
+    withName: 'UNTAR' {
         container = 'quay.io/nf-core/ubuntu:20.04'
     }
 }