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Bump default STAR version to 2.7.10a
1 parent 459f939 commit 58b4a3f

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-4
lines changed

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modules/local/star_align.nf

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -39,8 +39,8 @@ process STAR_ALIGN {
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def prefix = task.ext.prefix ?: "${meta.id}"
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// Note: 2.7X indices incompatible with AWS iGenomes so use older STAR version
42-
conda_str = "bioconda::star=2.7.9a bioconda::samtools=1.13 conda-forge::gawk=5.1.0"
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container_id = 'mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:a7908dfb0485a80ca94e4d17b0ac991532e4e989-0'
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conda_str = "bioconda::star=2.7.10a bioconda::samtools=1.15.1 conda-forge::gawk=5.1.0"
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container_id = 'mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:afaaa4c6f5b308b4b6aa2dd8e99e1466b2a6b0cd-0'
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if (is_aws_igenome) {
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conda_str = "bioconda::star=2.6.1d bioconda::samtools=1.10 conda-forge::gawk=5.1.0"
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container_id = 'mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:59cdd445419f14abac76b31dd0d71217994cbcc9-0'

modules/local/star_genomegenerate.nf

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -24,8 +24,8 @@ process STAR_GENOMEGENERATE {
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def args_list = args.tokenize()
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// Note: 2.7X indices incompatible with AWS iGenomes so use older STAR version
27-
conda_str = "bioconda::star=2.7.9a bioconda::samtools=1.13 conda-forge::gawk=5.1.0"
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container_id = 'mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:a7908dfb0485a80ca94e4d17b0ac991532e4e989-0'
27+
conda_str = "bioconda::star=2.7.10a bioconda::samtools=1.15.1 conda-forge::gawk=5.1.0"
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container_id = 'mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:afaaa4c6f5b308b4b6aa2dd8e99e1466b2a6b0cd-0'
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if (is_aws_igenome) {
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conda_str = "bioconda::star=2.6.1d bioconda::samtools=1.10 conda-forge::gawk=5.1.0"
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container_id = 'mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:59cdd445419f14abac76b31dd0d71217994cbcc9-0'

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