Fix failure due to SORTMERNA module update

drpatelh · drpatelh · commit 60b2417f4c98 · 2022-12-16T09:13:44.000Z
diff --git a/conf/modules.config b/conf/modules.config
@@ -269,7 +269,7 @@ if (!params.skip_bbsplit) {
 if (params.remove_ribo_rna) {
     process {
         withName: 'SORTMERNA' {
-            ext.args   = '--num_alignments 1 --fastx -v'
+            ext.args   = '--num_alignments 1 -v'
             publishDir = [
                 [
                     path: { "${params.outdir}/sortmerna" },

Original file line number	Diff line number	Diff line change
`@@ -269,7 +269,7 @@ if (!params.skip_bbsplit) {`
`269`	`269`	`if (params.remove_ribo_rna) {`
`270`	`270`	`process {`
`271`	`271`	`withName: 'SORTMERNA' {`
`272`		`- ext.args = '--num_alignments 1 --fastx -v'`
	`272`	`+ ext.args = '--num_alignments 1 -v'`
`273`	`273`	`publishDir = [`
`274`	`274`	`[`
`275`	`275`	`path: { "${params.outdir}/sortmerna" },`